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LOC580315 casein kinase II subunit alpha [ Strongylocentrotus purpuratus (purple sea urchin) ]

Gene ID: 580315, updated on 30-Sep-2019

Summary

Gene symbol
LOC580315
Gene description
casein kinase II subunit alpha
Gene type
protein coding
RefSeq status
MODEL
Organism
Strongylocentrotus purpuratus
Lineage
Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea; Euechinoidea; Echinacea; Echinoida; Strongylocentrotidae; Strongylocentrotus

Genomic context

See LOC580315 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
12
Annotation release Status Assembly Chr Location
102 current Spur_5.0 (GCF_000002235.5) Unplaced Scaffold NW_022145614.1 (24274453..24304477)
Build 3.1 previous assembly Spur_3.1 (GCF_000002235.3) Unplaced Scaffold NW_003577876.1 (217477..246803, complement)

NW_022145614.1Genomic Context describing neighboring genes Neighboring gene cilia- and flagella-associated protein 20-like Neighboring gene cilia- and flagella-associated protein 20 Neighboring gene coiled-coil domain-containing protein 113 Neighboring gene small nuclear ribonucleoprotein Sm D1

Genomic regions, transcripts, and products

Pathways from BioSystems

  • Mitophagy - animal, organism-specific biosystem (from KEGG)
    Mitophagy - animal, organism-specific biosystemMitochondria act as the energy powerhouse of the cell, and are essential for eukaryotic cells to grow and function normally. However, deleterious byproducts of oxidative phosphorylation process calle...
  • Mitophagy - animal, conserved biosystem (from KEGG)
    Mitophagy - animal, conserved biosystemMitochondria act as the energy powerhouse of the cell, and are essential for eukaryotic cells to grow and function normally. However, deleterious byproducts of oxidative phosphorylation process calle...
  • Ribosome biogenesis in eukaryotes, organism-specific biosystem (from KEGG)
    Ribosome biogenesis in eukaryotes, organism-specific biosystemRibosomes are the cellular factories responsible for making proteins. In eukaryotes, ribosome biogenesis involves the production and correct assembly of four rRNAs and about 80 ribosomal proteins. It...
  • Ribosome biogenesis in eukaryotes, conserved biosystem (from KEGG)
    Ribosome biogenesis in eukaryotes, conserved biosystemRibosomes are the cellular factories responsible for making proteins. In eukaryotes, ribosome biogenesis involves the production and correct assembly of four rRNAs and about 80 ribosomal proteins. It...
  • Wnt signaling pathway, organism-specific biosystem (from KEGG)
    Wnt signaling pathway, organism-specific biosystemWnt proteins are secreted morphogens that are required for basic developmental processes, such as cell-fate specification, progenitor-cell proliferation and the control of asymmetric cell division, i...
  • Wnt signaling pathway, conserved biosystem (from KEGG)
    Wnt signaling pathway, conserved biosystemWnt proteins are secreted morphogens that are required for basic developmental processes, such as cell-fate specification, progenitor-cell proliferation and the control of asymmetric cell division, i...

General protein information

Preferred Names
casein kinase II subunit alpha

NCBI Reference Sequences (RefSeq)

RefSeqs of Annotated Genomes: Strongylocentrotus purpuratus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Spur_5.0 Primary Assembly

Genomic

  1. NW_022145614.1 Reference Spur_5.0 Primary Assembly

    Range
    24274453..24304477
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_780382.5XP_785475.4  casein kinase II subunit alpha isoform X1

    Conserved Domains (2) summary
    cd14132
    Location:18323
    STKc_CK2_alpha; Catalytic subunit (alpha) of the Serine/Threonine Kinase, Casein Kinase 2
    pfam00069
    Location:37322
    Pkinase; Protein kinase domain
  2. XM_003728535.3XP_003728583.1  casein kinase II subunit alpha isoform X2

    See identical proteins and their annotated locations for XP_003728583.1

    Conserved Domains (2) summary
    cd14132
    Location:18323
    STKc_CK2_alpha; Catalytic subunit (alpha) of the Serine/Threonine Kinase, Casein Kinase 2
    pfam00069
    Location:37322
    Pkinase; Protein kinase domain

RNA

  1. XR_970459.2 RNA Sequence

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