LOC579483 ecdysone-induced protein 78C [Strongylocentrotus purpuratus (purple sea urchin)] - Gene

Summary

Gene symbol: LOC579483
Gene description: ecdysone-induced protein 78C
Gene type: protein coding
RefSeq status: MODEL
Organism: Strongylocentrotus purpuratus
Lineage: Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea; Euechinoidea; Echinacea; Camarodonta; Echinidea; Strongylocentrotidae; Strongylocentrotus
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Genomic context

Location:: chromosome: Un

Exon count:: 9

Annotation release	Status	Assembly	Chr	Location
102	current	Spur_5.0 (GCF_000002235.5)	Unplaced Scaffold	NW_022145603.1 (12714803..12749025, complement)
Build 3.1	previous assembly	Spur_3.1 (GCF_000002235.3)	Unplaced Scaffold	NW_003577322.1 (110380..166196)

NW_022145603.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:

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Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Homology

Orthologs from OrthoDB

Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables DNA-binding transcription factor activity	IEA Inferred from Electronic Annotation more info	PubMed
enables sequence-specific DNA binding	IEA Inferred from Electronic Annotation more info	PubMed
enables zinc ion binding	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in regulation of DNA-templated transcription	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: ecdysone-induced protein 78C

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Strongylocentrotus purpuratus Annotation Release 102 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Spur_5.0 Primary Assembly

Genomic

NW_022145603.1 Reference Spur_5.0 Primary Assembly

Range

12714803..12749025 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_030989224.1 → XP_030845084.1 ecdysone-induced protein 78C isoform X2

UniProtKB/TrEMBL

A0A7M7P288

Conserved Domains (2) summary

cd06941
Location:279 → 500

NR_LBD_DmE78_like; The ligand binding domain of Drosophila ecdysone-induced protein 78, a member of the nuclear receptor superfamily

cd06916
Location:77 → 147

NR_DBD_like; DNA-binding domain of nuclear receptors is composed of two C4-type zinc fingers
XM_030989223.1 → XP_030845083.1 ecdysone-induced protein 78C isoform X1

UniProtKB/TrEMBL

A0A7M7P3Z7

Conserved Domains (2) summary

cd06941
Location:281 → 502

NR_LBD_DmE78_like; The ligand binding domain of Drosophila ecdysone-induced protein 78, a member of the nuclear receptor superfamily

cd06916
Location:77 → 147

NR_DBD_like; DNA-binding domain of nuclear receptors is composed of two C4-type zinc fingers
XM_030989226.1 → XP_030845086.1 ecdysone-induced protein 78C isoform X3

UniProtKB/TrEMBL

A0A7M7P1W0

Conserved Domains (2) summary

cd06941
Location:278 → 499

NR_LBD_DmE78_like; The ligand binding domain of Drosophila ecdysone-induced protein 78, a member of the nuclear receptor superfamily

cd06916
Location:77 → 149

NR_DBD_like; DNA-binding domain of nuclear receptors is composed of two C4-type zinc fingers
XM_030989227.1 → XP_030845087.1 ecdysone-induced protein 78C isoform X4

UniProtKB/TrEMBL

A0A7M7P326

Conserved Domains (2) summary

cd06941
Location:261 → 482

NR_LBD_DmE78_like; The ligand binding domain of Drosophila ecdysone-induced protein 78, a member of the nuclear receptor superfamily

cd06916
Location:57 → 127

NR_DBD_like; DNA-binding domain of nuclear receptors is composed of two C4-type zinc fingers