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LOC578954 F-box/WD repeat-containing protein 11 [ Strongylocentrotus purpuratus (purple sea urchin) ]

Gene ID: 578954, updated on 30-Sep-2019

Summary

Gene symbol
LOC578954
Gene description
F-box/WD repeat-containing protein 11
Gene type
protein coding
RefSeq status
MODEL
Organism
Strongylocentrotus purpuratus
Lineage
Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea; Euechinoidea; Echinacea; Echinoida; Strongylocentrotidae; Strongylocentrotus
Also known as
btrc

Genomic context

See LOC578954 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
12
Annotation release Status Assembly Chr Location
102 current Spur_5.0 (GCF_000002235.5) Unplaced Scaffold NW_022145600.1 (249053..276993, complement)
Build 3.1 previous assembly Spur_3.1 (GCF_000002235.3) Unplaced Scaffold NW_003578237.1 (232380..262188)

NW_022145600.1Genomic Context describing neighboring genes Neighboring gene nucleolysin TIAR Neighboring gene protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha Neighboring gene protein PBDC1 Neighboring gene TATA box-binding protein-associated factor RNA polymerase I subunit B-like Neighboring gene collagen alpha-1(X) chain

Genomic regions, transcripts, and products

Pathways from BioSystems

  • SCF-BTRC complex, organism-specific biosystem (from KEGG)
    SCF-BTRC complex, organism-specific biosystemStructural complex; Genetic information processing; Ubiquitin system
  • SCF-BTRC complex, conserved biosystem (from KEGG)
    SCF-BTRC complex, conserved biosystemStructural complex; Genetic information processing; Ubiquitin system
  • Ubiquitin mediated proteolysis, organism-specific biosystem (from KEGG)
    Ubiquitin mediated proteolysis, organism-specific biosystemProtein ubiquitination plays an important role in eukaryotic cellular processes. It mainly functions as a signal for 26S proteasome dependent protein degradation. The addition of ubiquitin to protein...
  • Ubiquitin mediated proteolysis, conserved biosystem (from KEGG)
    Ubiquitin mediated proteolysis, conserved biosystemProtein ubiquitination plays an important role in eukaryotic cellular processes. It mainly functions as a signal for 26S proteasome dependent protein degradation. The addition of ubiquitin to protein...
  • Wnt signaling pathway, organism-specific biosystem (from KEGG)
    Wnt signaling pathway, organism-specific biosystemWnt proteins are secreted morphogens that are required for basic developmental processes, such as cell-fate specification, progenitor-cell proliferation and the control of asymmetric cell division, i...
  • Wnt signaling pathway, conserved biosystem (from KEGG)
    Wnt signaling pathway, conserved biosystemWnt proteins are secreted morphogens that are required for basic developmental processes, such as cell-fate specification, progenitor-cell proliferation and the control of asymmetric cell division, i...

General protein information

Preferred Names
F-box/WD repeat-containing protein 11
Names
beta-transducin repeat containing E3 ubiquitin protein ligase

NCBI Reference Sequences (RefSeq)

RefSeqs of Annotated Genomes: Strongylocentrotus purpuratus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Spur_5.0 Primary Assembly

Genomic

  1. NW_022145600.1 Reference Spur_5.0 Primary Assembly

    Range
    249053..276993 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_779090.5XP_784183.2  F-box/WD repeat-containing protein 11

    Conserved Domains (5) summary
    COG2319
    Location:179495
    WD40; WD40 repeat [General function prediction only]
    cd00200
    Location:197482
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    pfam12125
    Location:4179
    Beta-TrCP_D; D domain of beta-TrCP
    pfam12937
    Location:83130
    F-box-like; F-box-like
    sd00039
    Location:207242
    7WD40; WD40 repeat [structural motif]
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