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ZSWIM5 zinc finger SWIM-type containing 5 [ Homo sapiens (human) ]

Gene ID: 57643, updated on 1-Jun-2020

Summary

Official Symbol
ZSWIM5provided by HGNC
Official Full Name
zinc finger SWIM-type containing 5provided by HGNC
Primary source
HGNC:HGNC:29299
See related
Ensembl:ENSG00000162415
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Broad expression in adrenal (RPKM 5.6), ovary (RPKM 4.2) and 22 other tissues See more
Orthologs

Genomic context

See ZSWIM5 in Genome Data Viewer
Location:
1p34.1
Exon count:
14
Annotation release Status Assembly Chr Location
109.20200522 current GRCh38.p13 (GCF_000001405.39) 1 NC_000001.11 (45016399..45206605, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (45482071..45672250, complement)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene HECT domain E3 ubiquitin protein ligase 3 Neighboring gene uroporphyrinogen decarboxylase Neighboring gene oligosaccharyltransferase complex subunit pseudogene 5 Neighboring gene Sharpr-MPRA regulatory region 10410 Neighboring gene uncharacterized LOC105378691 Neighboring gene long intergenic non-protein coding RNA 1144 Neighboring gene 4-hydroxyphenylpyruvate dioxygenase like

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • KIAA1511

Gene Ontology Provided by GOA

Function Evidence Code Pubs
zinc ion binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
regulation of axon guidance IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
Cul2-RING ubiquitin ligase complex IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
extracellular space HDA PubMed 

General protein information

Preferred Names
zinc finger SWIM domain-containing protein 5
Names
zinc finger, SWIM domain containing 5

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_020883.2NP_065934.1  zinc finger SWIM domain-containing protein 5

    See identical proteins and their annotated locations for NP_065934.1

    Status: VALIDATED

    Source sequence(s)
    AB040944, AL359473, AL592294, BC013836, BM711793, CN429257
    Consensus CDS
    CCDS41319.1
    UniProtKB/Swiss-Prot
    Q9P217
    Related
    ENSP00000352614.5, ENST00000359600.6

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p13 Primary Assembly

    Range
    45016399..45206605 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017001913.1XP_016857402.1  zinc finger SWIM domain-containing protein 5 isoform X1

  2. XM_011541861.3XP_011540163.1  zinc finger SWIM domain-containing protein 5 isoform X2

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