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EP400 E1A binding protein p400 [ Homo sapiens (human) ]

Gene ID: 57634, updated on 7-Jun-2020

Summary

Official Symbol
EP400provided by HGNC
Official Full Name
E1A binding protein p400provided by HGNC
Primary source
HGNC:HGNC:11958
See related
Ensembl:ENSG00000183495 MIM:606265
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
P400; CAGH32; TNRC12
Expression
Ubiquitous expression in testis (RPKM 8.1), ovary (RPKM 5.8) and 25 other tissues See more
Orthologs

Genomic context

See EP400 in Genome Data Viewer
Location:
12q24.33
Exon count:
53
Annotation release Status Assembly Chr Location
109.20200522 current GRCh38.p13 (GCF_000001405.39) 12 NC_000012.12 (131949942..132080460)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 12 NC_000012.11 (132434465..132565011)

Chromosome 12 - NC_000012.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107984455 Neighboring gene pseudouridine synthase 1 Neighboring gene small nucleolar RNA, H/ACA box 49 Neighboring gene EP400 pseudogene 1 Neighboring gene uncharacterized LOC107987169 Neighboring gene DEAD-box helicase 51

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

HIV-1 interactions

Protein interactions

Protein Gene Interaction Pubs
Tat tat The core of the p400/TRRAP complex, consists of BAF53A, P400, RUVBL1, RUVBL2, TRRAP, are identified to interact with HIV-1 Tat in Jurkat cell PubMed

Go to the HIV-1, Human Interaction Database

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • FLJ42018, FLJ45115, DKFZP434I225

Gene Ontology Provided by GOA

Function Evidence Code Pubs
ATP binding IEA
Inferred from Electronic Annotation
more info
 
DNA binding IEA
Inferred from Electronic Annotation
more info
 
chromatin binding IEA
Inferred from Electronic Annotation
more info
 
helicase activity IEA
Inferred from Electronic Annotation
more info
 
protein antigen binding IEA
Inferred from Electronic Annotation
more info
 
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
histone H2A acetylation IDA
Inferred from Direct Assay
more info
PubMed 
histone H4 acetylation IDA
Inferred from Direct Assay
more info
PubMed 
Component Evidence Code Pubs
NuA4 histone acetyltransferase complex IDA
Inferred from Direct Assay
more info
PubMed 
Swr1 complex IDA
Inferred from Direct Assay
more info
PubMed 
nuclear speck ISS
Inferred from Sequence or Structural Similarity
more info
 
nucleoplasm TAS
Traceable Author Statement
more info
 

General protein information

Preferred Names
E1A-binding protein p400
Names
CAG repeat protein 32
domino homolog
hDomino
hDomino(p400)
p400 SWI2/SNF2-related protein
p400 kDa SWI2/SNF2-related protein
trinucleotide repeat containing 12
trinucleotide repeat-containing gene 12 protein

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_015409.5NP_056224.3  E1A-binding protein p400

    Status: VALIDATED

    Source sequence(s)
    AC131009, AC137590, AC137632
    Consensus CDS
    CCDS31929.2
    UniProtKB/Swiss-Prot
    Q96L91
    Related
    ENSP00000374212.2, ENST00000389561.7
    Conserved Domains (5) summary
    smart00573
    Location:764835
    HSA; domain in helicases and associated with SANT domains
    cd00046
    Location:10751210
    DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
    pfam00176
    Location:10581338
    SNF2_N; SNF2 family N-terminal domain
    pfam00271
    Location:18611977
    Helicase_C; Helicase conserved C-terminal domain
    pfam15790
    Location:1469
    EP400_N; E1A-binding protein p400, N-terminal

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000012.12 Reference GRCh38.p13 Primary Assembly

    Range
    131949942..132080460
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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