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PTMS parathymosin [ Homo sapiens (human) ]

Gene ID: 5763, updated on 13-Mar-2020

Summary

Official Symbol
PTMSprovided by HGNC
Official Full Name
parathymosinprovided by HGNC
Primary source
HGNC:HGNC:9629
See related
Ensembl:ENSG00000159335 MIM:168440
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
ParaT
Expression
Ubiquitous expression in liver (RPKM 104.5), prostate (RPKM 75.7) and 24 other tissues See more
Orthologs

Genomic context

See PTMS in Genome Data Viewer
Location:
12p13.31
Exon count:
5
Annotation release Status Assembly Chr Location
109.20200228 current GRCh38.p13 (GCF_000001405.39) 12 NC_000012.12 (6766363..6770952)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 12 NC_000012.11 (6875255..6880118)

Chromosome 12 - NC_000012.12Genomic Context describing neighboring genes Neighboring gene COP9 signalosome subunit 7A Neighboring gene myeloid leukemia factor 2 Neighboring gene lymphocyte activating 3 Neighboring gene RNA, 7SL, cytoplasmic 380, pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by GOA

Process Evidence Code Pubs
DNA replication TAS
Traceable Author Statement
more info
PubMed 
immune system process IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
nucleus TAS
Traceable Author Statement
more info
PubMed 

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001330333.2NP_001317262.1  parathymosin isoform 1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
    Source sequence(s)
    BC007616, BM762034, BQ023417, HY157657
    Consensus CDS
    CCDS81656.1
    UniProtKB/TrEMBL
    F5GXR3
    Related
    ENSP00000374113.4, ENST00000389462.8
  2. NM_002824.6NP_002815.3  parathymosin isoform 2

    See identical proteins and their annotated locations for NP_002815.3

    Status: REVIEWED

    Description
    Transcript Variant: This variant (2) uses an alternate splice site in the central coding region, which results in a frameshift, compared to variant 1. The encoded isoform (2) has a shorter and distinct C-terminus, compared to isoform 1.
    Source sequence(s)
    BC017025, BQ023417, HY157657
    Consensus CDS
    CCDS8560.1
    UniProtKB/Swiss-Prot
    P20962
    UniProtKB/TrEMBL
    A0A158RFU3
    Related
    ENSP00000478828.1, ENST00000619580.4

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000012.12 Reference GRCh38.p13 Primary Assembly

    Range
    6766363..6770952
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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