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LOC576086 delta-1-pyrroline-5-carboxylate synthase [ Strongylocentrotus purpuratus (purple sea urchin) ]

Gene ID: 576086, updated on 14-Dec-2023

Summary

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Gene symbol
LOC576086
Gene description
delta-1-pyrroline-5-carboxylate synthase
Gene type
protein coding
RefSeq status
MODEL
Organism
Strongylocentrotus purpuratus
Lineage
Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea; Euechinoidea; Echinacea; Camarodonta; Echinidea; Strongylocentrotidae; Strongylocentrotus
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Genomic context

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Location:
chromosome: Un
Exon count:
16
Annotation release Status Assembly Chr Location
102 current Spur_5.0 (GCF_000002235.5) Unplaced Scaffold NW_022145600.1 (23580308..23599840)
Build 3.1 previous assembly Spur_3.1 (GCF_000002235.3) Unplaced Scaffold NW_003577024.1 (90711..106593, complement)

NW_022145600.1Genomic Context describing neighboring genes Neighboring gene NF-kappa-B essential modulator Neighboring gene hematopoietically-expressed homeobox protein HHEX homolog Neighboring gene ecdysis triggering hormone receptor subtype-B Neighboring gene eukaryotic translation initiation factor 3 subunit A-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene structure in the sea urchin Strongylocentrotus purpuratus based on transcriptome analysis. Tu Q, et al. Genome Res, 2012 Oct. PMID 22709795, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables glutamate 5-kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables glutamate-5-semialdehyde dehydrogenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in proline biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
delta-1-pyrroline-5-carboxylate synthase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Strongylocentrotus purpuratus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Spur_5.0 Primary Assembly

Genomic

  1. NW_022145600.1 Reference Spur_5.0 Primary Assembly

    Range
    23580308..23599840
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030985858.1 → XP_030841718.1  delta-1-pyrroline-5-carboxylate synthase

    UniProtKB/TrEMBL
    A0A7M7NUJ4
    Conserved Domains (1) summary
    TIGR01092
    Location:98 → 820
    P5CS; delta l-pyrroline-5-carboxylate synthetase
Nucleotide Protein
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