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BAHCC1 BAH domain and coiled-coil containing 1 [ Homo sapiens (human) ]

Gene ID: 57597, updated on 12-Aug-2022

Summary

Official Symbol
BAHCC1provided by HGNC
Official Full Name
BAH domain and coiled-coil containing 1provided by HGNC
Primary source
HGNC:HGNC:29279
See related
Ensembl:ENSG00000266074 MIM:617646; AllianceGenome:HGNC:29279
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
BAHD2
Summary
Predicted to enable chromatin binding activity. [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in fat (RPKM 2.7), prostate (RPKM 2.1) and 25 other tissues See more
Orthologs
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Genomic context

See BAHCC1 in Genome Data Viewer
Location:
17q25.3
Exon count:
30
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 17 NC_000017.11 (81395457..81466331)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 17 NC_060941.1 (82310622..82383340)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 17 NC_000017.10 (79369257..79433357)

Chromosome 17 - NC_000017.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124904083 Neighboring gene long intergenic non-protein coding RNA 3048 Neighboring gene microRNA 4740 Neighboring gene uncharacterized LOC124904084 Neighboring gene microRNA 3186 Neighboring gene CRISPRi-validated cis-regulatory element chr17.6006 Neighboring gene long intergenic non-protein coding RNA 1971

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • FLJ23058, KIAA1447

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables chromatin binding IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
BAH and coiled-coil domain-containing protein 1
Names
BAH domain-containing protein 2
bromo adjacent homology domain-containing protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001291324.3NP_001278253.1  BAH and coiled-coil domain-containing protein 1 isoform 1

    See identical proteins and their annotated locations for NP_001278253.1

    Status: VALIDATED

    Source sequence(s)
    AC110285, AC139149, AC213194
    UniProtKB/Swiss-Prot
    Q5U629, Q9P281
    UniProtKB/TrEMBL
    A0A075B747
    Related
    ENSP00000462154.4, ENST00000584436.7
    Conserved Domains (2) summary
    cd04714
    Location:25122631
    BAH_BAHCC1; BAH, or Bromo Adjacent Homology domain, as present in mammalian BAHCC1 and similar proteins. BAHCC1 stands for BAH domain and coiled-coil containing 1. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the ...
    cl26464
    Location:8501253
    Atrophin-1; Atrophin-1 family
  2. NM_001377448.1NP_001364377.1  BAH and coiled-coil domain-containing protein 1 isoform 2

    Status: VALIDATED

    Source sequence(s)
    AC110285, AC139149, AC213194
    Consensus CDS
    CCDS74173.1
    UniProtKB/TrEMBL
    F8WBW8
    Related
    ENSP00000502710.1, ENST00000675386.2
    Conserved Domains (2) summary
    cd04714
    Location:24812600
    BAH_BAHCC1; BAH, or Bromo Adjacent Homology domain, as present in mammalian BAHCC1 and similar proteins. BAHCC1 stands for BAH domain and coiled-coil containing 1. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the ...
    cd20470
    Location:19382006
    Tudor_BAHCC1; Tudor domain found in BAH and coiled-coil domain-containing protein 1 (BAHCC1) and similar proteins

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000017.11 Reference GRCh38.p14 Primary Assembly

    Range
    81395457..81466331
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_047436467.1XP_047292423.1  BAH and coiled-coil domain-containing protein 1 isoform X2

  2. XM_011525063.3XP_011523365.1  BAH and coiled-coil domain-containing protein 1 isoform X3

    Conserved Domains (1) summary
    cd04714
    Location:25042623
    BAH_BAHCC1; BAH, or Bromo Adjacent Homology domain, as present in mammalian BAHCC1 and similar proteins. BAHCC1 stands for BAH domain and coiled-coil containing 1. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the ...
  3. XM_047436466.1XP_047292422.1  BAH and coiled-coil domain-containing protein 1 isoform X1

    UniProtKB/Swiss-Prot
    Q5U629

Reference GRCh38.p14 PATCHES

Genomic

  1. NW_025791805.1 Reference GRCh38.p14 PATCHES

    Range
    50095..122536
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060941.1 Alternate T2T-CHM13v2.0

    Range
    82310622..82383340
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001080519.2: Suppressed sequence

    Description
    NM_001080519.2: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript and the protein.
  2. NM_024696.1: Suppressed sequence

    Description
    NM_024696.1: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript and the protein.