Format

Send to:

Choose Destination

STAMBPL1 STAM binding protein like 1 [ Homo sapiens (human) ]

Gene ID: 57559, updated on 5-May-2020

Summary

Official Symbol
STAMBPL1provided by HGNC
Official Full Name
STAM binding protein like 1provided by HGNC
Primary source
HGNC:HGNC:24105
See related
Ensembl:ENSG00000138134 MIM:612352
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
AMSH-FP; AMSH-LP; ALMalpha; bA399O19.2
Expression
Broad expression in adrenal (RPKM 7.5), testis (RPKM 6.2) and 22 other tissues See more
Orthologs

Genomic context

See STAMBPL1 in Genome Data Viewer
Location:
10q23.31
Exon count:
17
Annotation release Status Assembly Chr Location
109.20200228 current GRCh38.p13 (GCF_000001405.39) 10 NC_000010.11 (88879368..88923502)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 10 NC_000010.10 (90639597..90735343)

Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene lipase family member M Neighboring gene ankyrin repeat domain 22 Neighboring gene pentatricopeptide repeat domain 2 pseudogene 2 Neighboring gene uncharacterized LOC105379869 Neighboring gene ACTA2 antisense RNA 1 Neighboring gene actin alpha 2, smooth muscle

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • FLJ31524, KIAA1373

Gene Ontology Provided by GOA

Function Evidence Code Pubs
Lys63-specific deubiquitinase activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Lys63-specific deubiquitinase activity TAS
Traceable Author Statement
more info
 
metal ion binding IEA
Inferred from Electronic Annotation
more info
 
metallopeptidase activity IEA
Inferred from Electronic Annotation
more info
 
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
thiol-dependent ubiquitin-specific protease activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Process Evidence Code Pubs
protein K63-linked deubiquitination IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
protein deubiquitination IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
protein deubiquitination TAS
Traceable Author Statement
more info
 
Component Evidence Code Pubs
cytosol TAS
Traceable Author Statement
more info
 
endosome IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
membrane HDA PubMed 
membrane IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
AMSH-like protease
Names
associated molecule with the SH3 domain of STAM (AMSH) - Family Protein
associated molecule with the SH3 domain of STAM (AMSH) like protein
NP_065850.1
XP_006717991.1
XP_006717993.1
XP_011538285.1
XP_011538287.1
XP_016871942.1
XP_016871944.1
XP_016871945.1
XP_016871946.1
XP_016871947.1

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_020799.4NP_065850.1  AMSH-like protease

    See identical proteins and their annotated locations for NP_065850.1

    Status: VALIDATED

    Source sequence(s)
    AK056086, AW006657, CD244526
    Consensus CDS
    CCDS7391.1
    UniProtKB/Swiss-Prot
    Q96FJ0
    Related
    ENSP00000360994.3, ENST00000371926.8
    Conserved Domains (3) summary
    cd08066
    Location:266436
    MPN_AMSH_like; Mov34/MPN/PAD-1 family
    pfam08969
    Location:28129
    USP8_dimer; USP8 dimerization domain
    cl20817
    Location:120198
    GBP_C; Guanylate-binding protein, C-terminal domain

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000010.11 Reference GRCh38.p13 Primary Assembly

    Range
    88879368..88923502
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006717928.2XP_006717991.1  AMSH-like protease isoform X1

    See identical proteins and their annotated locations for XP_006717991.1

    UniProtKB/Swiss-Prot
    Q96FJ0
    Conserved Domains (3) summary
    cd08066
    Location:266436
    MPN_AMSH_like; Mov34/MPN/PAD-1 family
    pfam08969
    Location:28129
    USP8_dimer; USP8 dimerization domain
    cl20817
    Location:120198
    GBP_C; Guanylate-binding protein, C-terminal domain
  2. XM_006717930.3XP_006717993.1  AMSH-like protease isoform X1

    See identical proteins and their annotated locations for XP_006717993.1

    UniProtKB/Swiss-Prot
    Q96FJ0
    Related
    ENSP00000360995.3, ENST00000371927.7
    Conserved Domains (3) summary
    cd08066
    Location:266436
    MPN_AMSH_like; Mov34/MPN/PAD-1 family
    pfam08969
    Location:28129
    USP8_dimer; USP8 dimerization domain
    cl20817
    Location:120198
    GBP_C; Guanylate-binding protein, C-terminal domain
  3. XM_017016455.1XP_016871944.1  AMSH-like protease isoform X1

    UniProtKB/Swiss-Prot
    Q96FJ0
    Conserved Domains (3) summary
    cd08066
    Location:266436
    MPN_AMSH_like; Mov34/MPN/PAD-1 family
    pfam08969
    Location:28129
    USP8_dimer; USP8 dimerization domain
    cl20817
    Location:120198
    GBP_C; Guanylate-binding protein, C-terminal domain
  4. XM_011539983.1XP_011538285.1  AMSH-like protease isoform X1

    See identical proteins and their annotated locations for XP_011538285.1

    UniProtKB/Swiss-Prot
    Q96FJ0
    Conserved Domains (3) summary
    cd08066
    Location:266436
    MPN_AMSH_like; Mov34/MPN/PAD-1 family
    pfam08969
    Location:28129
    USP8_dimer; USP8 dimerization domain
    cl20817
    Location:120198
    GBP_C; Guanylate-binding protein, C-terminal domain
  5. XM_017016453.1XP_016871942.1  AMSH-like protease isoform X1

    UniProtKB/Swiss-Prot
    Q96FJ0
    Conserved Domains (3) summary
    cd08066
    Location:266436
    MPN_AMSH_like; Mov34/MPN/PAD-1 family
    pfam08969
    Location:28129
    USP8_dimer; USP8 dimerization domain
    cl20817
    Location:120198
    GBP_C; Guanylate-binding protein, C-terminal domain
  6. XM_017016456.1XP_016871945.1  AMSH-like protease isoform X1

    UniProtKB/Swiss-Prot
    Q96FJ0
    Conserved Domains (3) summary
    cd08066
    Location:266436
    MPN_AMSH_like; Mov34/MPN/PAD-1 family
    pfam08969
    Location:28129
    USP8_dimer; USP8 dimerization domain
    cl20817
    Location:120198
    GBP_C; Guanylate-binding protein, C-terminal domain
  7. XM_017016457.2XP_016871946.1  AMSH-like protease isoform X2

  8. XM_011539985.2XP_011538287.1  AMSH-like protease isoform X1

    See identical proteins and their annotated locations for XP_011538287.1

    UniProtKB/Swiss-Prot
    Q96FJ0
    Conserved Domains (3) summary
    cd08066
    Location:266436
    MPN_AMSH_like; Mov34/MPN/PAD-1 family
    pfam08969
    Location:28129
    USP8_dimer; USP8 dimerization domain
    cl20817
    Location:120198
    GBP_C; Guanylate-binding protein, C-terminal domain
  9. XM_017016458.1XP_016871947.1  AMSH-like protease isoform X3

Support Center