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ZNF624 zinc finger protein 624 [ Homo sapiens (human) ]

Gene ID: 57547, updated on 12-Oct-2019

Summary

Official Symbol
ZNF624provided by HGNC
Official Full Name
zinc finger protein 624provided by HGNC
Primary source
HGNC:HGNC:29254
See related
Ensembl:ENSG00000197566
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Broad expression in testis (RPKM 2.9), ovary (RPKM 1.2) and 24 other tissues See more
Orthologs

Genomic context

See ZNF624 in Genome Data Viewer
Location:
17p11.2
Exon count:
6
Annotation release Status Assembly Chr Location
109.20190905 current GRCh38.p13 (GCF_000001405.39) 17 NC_000017.11 (16620734..16655210, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 17 NC_000017.10 (16524048..16557167, complement)

Chromosome 17 - NC_000017.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105371554 Neighboring gene zinc finger protein 287 Neighboring gene serine and arginine rich splicing factor 6 pseudogene Neighboring gene coiled-coil domain containing 144A Neighboring gene NIMA-related kinase 4 pseudogene 2 Neighboring gene ribonuclease H1 pseudogene 2

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Pathways from BioSystems

  • Gene Expression, organism-specific biosystem (from REACTOME)
    Gene Expression, organism-specific biosystemGene Expression covers the pathways by which genomic DNA is transcribed to yield RNA, the regulation of these transcription processes, and the pathways by which newly-made RNA Transcripts are process...
  • Generic Transcription Pathway, organism-specific biosystem (from REACTOME)
    Generic Transcription Pathway, organism-specific biosystemOVERVIEW OF TRANSCRIPTION REGULATION: Detailed studies of gene transcription regulation in a wide variety of eukaryotic systems has revealed the general principles and mechanisms by which cell- or t...

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • KIAA1349, MGC119602, MGC119603, MGC119605

Gene Ontology Provided by GOA

Function Evidence Code Pubs
DNA binding IEA
Inferred from Electronic Annotation
more info
 
metal ion binding IEA
Inferred from Electronic Annotation
more info
 
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
regulation of transcription, DNA-templated IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
nucleus IEA
Inferred from Electronic Annotation
more info
 

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_020787.4NP_065838.2  zinc finger protein 624

    See identical proteins and their annotated locations for NP_065838.2

    Status: VALIDATED

    Source sequence(s)
    BC103943, BF435259, DA808501
    Consensus CDS
    CCDS11180.1
    UniProtKB/Swiss-Prot
    Q9P2J8
    Related
    ENSP00000310472.7, ENST00000311331.12
    Conserved Domains (6) summary
    smart00349
    Location:54114
    KRAB; krueppel associated box
    COG5048
    Location:414826
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:502522
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:388410
    zf-C2H2; Zinc finger, C2H2 type
    pfam01352
    Location:5493
    KRAB; KRAB box
    pfam13465
    Location:346371
    zf-H2C2_2; Zinc-finger double domain

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109.20190905

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000017.11 Reference GRCh38.p13 Primary Assembly

    Range
    16620734..16655210 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011523970.2XP_011522272.1  zinc finger protein 624 isoform X1

    Conserved Domains (6) summary
    smart00349
    Location:52112
    KRAB; krueppel associated box
    COG5048
    Location:412824
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:500520
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:386408
    zf-C2H2; Zinc finger, C2H2 type
    pfam01352
    Location:5291
    KRAB; KRAB box
    pfam13465
    Location:344369
    zf-H2C2_2; Zinc-finger double domain
  2. XM_006721562.4XP_006721625.1  zinc finger protein 624 isoform X2

    See identical proteins and their annotated locations for XP_006721625.1

    UniProtKB/Swiss-Prot
    Q9P2J8
    Conserved Domains (6) summary
    smart00349
    Location:54114
    KRAB; krueppel associated box
    COG5048
    Location:414826
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:502522
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:388410
    zf-C2H2; Zinc finger, C2H2 type
    pfam01352
    Location:5493
    KRAB; KRAB box
    pfam13465
    Location:346371
    zf-H2C2_2; Zinc-finger double domain
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