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TXNDC16 thioredoxin domain containing 16 [ Homo sapiens (human) ]

Gene ID: 57544, updated on 1-Jun-2020

Summary

Official Symbol
TXNDC16provided by HGNC
Official Full Name
thioredoxin domain containing 16provided by HGNC
Primary source
HGNC:HGNC:19965
See related
Ensembl:ENSG00000087301 MIM:616179
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
ERp90; KIAA1344
Expression
Ubiquitous expression in prostate (RPKM 12.7), brain (RPKM 6.3) and 25 other tissues See more
Orthologs

Genomic context

See TXNDC16 in Genome Data Viewer
Location:
14q22.1
Exon count:
24
Annotation release Status Assembly Chr Location
109.20200522 current GRCh38.p13 (GCF_000001405.39) 14 NC_000014.9 (52430590..52552583, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 14 NC_000014.8 (52897308..53019301, complement)

Chromosome 14 - NC_000014.9Genomic Context describing neighboring genes Neighboring gene pumilio domain-containing protein KIAA0020-like Neighboring gene prostaglandin E receptor 2 Neighboring gene G protein-coupled receptor 137C Neighboring gene endoplasmic reticulum oxidoreductase 1 alpha

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

Phenotypes

NHGRI GWAS Catalog

Description
Genome wide study of maternal and parent-of-origin effects on the etiology of orofacial clefts.
NHGRI GWA Catalog
Genome-wide association study of primary dentition pit-and-fissure and smooth surface caries.
NHGRI GWA Catalog
Identification of 23 new prostate cancer susceptibility loci using the iCOGS custom genotyping array.
NHGRI GWA Catalog

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • KIAA1344

Gene Ontology Provided by GOA

Function Evidence Code Pubs
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
biological_process ND
No biological Data available
more info
 
cell redox homeostasis IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
cell IEA
Inferred from Electronic Annotation
more info
 
endoplasmic reticulum lumen IDA
Inferred from Direct Assay
more info
PubMed 
extracellular exosome HDA PubMed 

General protein information

Preferred Names
thioredoxin domain-containing protein 16

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001160047.1NP_001153519.1  thioredoxin domain-containing protein 16 isoform 2 precursor

    See identical proteins and their annotated locations for NP_001153519.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) uses an alternate in-frame splice site in the 5' coding region compared to variant 1. This results in a shorter protein (isoform 2) compared to isoform 1.
    Source sequence(s)
    BC142650, BC144469, DA231411, DB083799
    UniProtKB/Swiss-Prot
    Q9P2K2
    UniProtKB/TrEMBL
    B7ZME4
    Conserved Domains (2) summary
    cd02961
    Location:389487
    PDI_a_family; Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI ...
    pfam13848
    Location:528717
    Thioredoxin_6; Thioredoxin-like domain
  2. NM_020784.3NP_065835.2  thioredoxin domain-containing protein 16 isoform 1 precursor

    See identical proteins and their annotated locations for NP_065835.2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
    Source sequence(s)
    BC142650
    Consensus CDS
    CCDS32083.1
    UniProtKB/Swiss-Prot
    Q9P2K2
    Related
    ENSP00000281741.4, ENST00000281741.9
    Conserved Domains (2) summary
    cd02961
    Location:394492
    PDI_a_family; Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI ...
    pfam13848
    Location:533722
    Thioredoxin_6; Thioredoxin-like domain

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000014.9 Reference GRCh38.p13 Primary Assembly

    Range
    52430590..52552583 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017021505.1XP_016876994.1  thioredoxin domain-containing protein 16 isoform X1

    Conserved Domains (1) summary
    cl00388
    Location:394437
    Thioredoxin_like; Protein Disulfide Oxidoreductases and Other Proteins with a Thioredoxin fold

RNA

  1. XR_001750463.1 RNA Sequence

  2. XR_001750462.1 RNA Sequence

  3. XR_001750464.1 RNA Sequence

  4. XR_001750466.1 RNA Sequence

  5. XR_001750465.1 RNA Sequence

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