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RTL9 retrotransposon Gag like 9 [ Homo sapiens (human) ]

Gene ID: 57529, updated on 10-Dec-2019

Summary

Official Symbol
RTL9provided by HGNC
Official Full Name
retrotransposon Gag like 9provided by HGNC
Primary source
HGNC:HGNC:29245
See related
Ensembl:ENSG00000243978 MIM:300965
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
MAR9; MART9; RGAG1; SIRH10
Expression
Restricted expression toward testis (RPKM 5.0) See more
Orthologs

Genomic context

See RTL9 in Genome Data Viewer
Location:
Xq23
Exon count:
6
Annotation release Status Assembly Chr Location
109.20191205 current GRCh38.p13 (GCF_000001405.39) X NC_000023.11 (110358101..110456334)
105 previous assembly GRCh37.p13 (GCF_000001405.25) X NC_000023.10 (109602044..109699562)

Chromosome X - NC_000023.11Genomic Context describing neighboring genes Neighboring gene AMMECR nuclear protein 1 Neighboring gene uncharacterized LOC105373312 Neighboring gene G protein subunit gamma 5 pseudogene 2 Neighboring gene teratocarcinoma-derived growth factor 1 pseudogene 3 Neighboring gene mannose-6-phosphate receptor, cation dependent pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • KIAA1318, MGC142230

General protein information

Preferred Names
retrotransposon Gag-like protein 9
Names
Sushi-Ichi retrotransposon homolog 10
mammalian retrotransposon-derived 9
retrotransposon gag domain containing 1
retrotransposon gag domain-containing protein 1
tumor antigen BJ-HCC-23
tumor antigen BJHCC23

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_016402.2 RefSeqGene

    Range
    5001..42278
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_020769.2NP_065820.1  retrotransposon Gag-like protein 9

    See identical proteins and their annotated locations for NP_065820.1

    Status: VALIDATED

    Source sequence(s)
    AB037739, AC000113
    Consensus CDS
    CCDS14552.1
    UniProtKB/Swiss-Prot
    Q8NET4
    Related
    ENSP00000419786.2, ENST00000465301.2
    Conserved Domains (1) summary
    pfam03732
    Location:11891280
    Retrotrans_gag; Retrotransposon gag protein

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000023.11 Reference GRCh38.p13 Primary Assembly

    Range
    110358101..110456334
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017029695.1XP_016885184.1  retrotransposon Gag-like protein 9 isoform X1

    UniProtKB/Swiss-Prot
    Q8NET4
    Conserved Domains (1) summary
    pfam03732
    Location:11891280
    Retrotrans_gag; Retrotransposon gag protein
  2. XM_011530999.2XP_011529301.1  retrotransposon Gag-like protein 9 isoform X1

    See identical proteins and their annotated locations for XP_011529301.1

    UniProtKB/Swiss-Prot
    Q8NET4
    Conserved Domains (1) summary
    pfam03732
    Location:11891280
    Retrotrans_gag; Retrotransposon gag protein
  3. XM_011530998.2XP_011529300.1  retrotransposon Gag-like protein 9 isoform X1

    See identical proteins and their annotated locations for XP_011529300.1

    UniProtKB/Swiss-Prot
    Q8NET4
    Conserved Domains (1) summary
    pfam03732
    Location:11891280
    Retrotrans_gag; Retrotransposon gag protein
  4. XM_017029694.1XP_016885183.1  retrotransposon Gag-like protein 9 isoform X1

    UniProtKB/Swiss-Prot
    Q8NET4
    Related
    ENSP00000441452.1, ENST00000540313.1
    Conserved Domains (1) summary
    pfam03732
    Location:11891280
    Retrotrans_gag; Retrotransposon gag protein
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