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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_020764.4 → NP_065815.1 caskin-1
Status: VALIDATED
- Source sequence(s)
-
AC009065, AF451977
- Consensus CDS
-
CCDS42103.1
- UniProtKB/Swiss-Prot
- Q8WXD9, Q9P2P0
- Related
- ENSP00000345436.6, ENST00000343516.8
- Conserved Domains (13) summary
-
- cd09497
Location:471 → 536
- SAM_caskin1,2_repeat1; SAM domain of caskin protein repeat 1
- cd09498
Location:537 → 607
- SAM_caskin1,2_repeat2; SAM domain of caskin protein repeat 2
- smart00454
Location:470 → 532
- SAM; Sterile alpha motif
- cd12062
Location:284 → 345
- SH3_Caskin1; Src Homology 3 domain of CASK interacting protein 1
- cd00204
Location:43 → 168
- ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
- pfam06484
Location:651 → 809
- Ten_N; Teneurin Intracellular Region
- pfam12796
Location:119 → 218
- Ank_2; Ankyrin repeats (3 copies)
- pfam13637
Location:7 → 69
- Ank_4; Ankyrin repeats (many copies)
- pfam13857
Location:208 → 261
- Ank_5; Ankyrin repeats (many copies)
- pfam16600
Location:373 → 421
- Caskin1-CID; Caskin1 CASK-interaction domain
- pfam16632
Location:1370 → 1431
- Caskin-tail; C-terminal region of Caskin
- pfam16907
Location:876 → 947
- Caskin-Pro-rich; Proline rich region of Caskin proteins
- sd00045
Location:114 → 145
- ANK; ANK repeat [structural motif]
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000016.10 Reference GRCh38.p14 Primary Assembly
- Range
-
2177180..2196605 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_024450361.2 → XP_024306129.1 caskin-1 isoform X1
- Conserved Domains (10) summary
-
- cd09498
Location:474 → 536
- SAM_caskin1,2_repeat2; SAM domain of caskin protein repeat 2
- cd12062
Location:284 → 345
- SH3_Caskin1; Src Homology 3 domain of CASK interacting protein 1
- cd00204
Location:43 → 168
- ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
- sd00045
Location:114 → 145
- ANK; ANK repeat [structural motif]
- pfam13637
Location:7 → 69
- Ank_4; Ankyrin repeats (many copies)
- pfam16600
Location:373 → 421
- Caskin1-CID; Caskin1 CASK-interaction domain
- pfam16632
Location:1299 → 1360
- Caskin-tail; C-terminal region of Caskin
- pfam16907
Location:805 → 876
- Caskin-Pro-rich; Proline rich region of Caskin proteins
- cl26386
Location:640 → 855
- DNA_pol3_gamma3; DNA polymerase III subunits gamma and tau domain III
- cl26464
Location:933 → 1263
- Atrophin-1; Atrophin-1 family
Alternate T2T-CHM13v2.0
Genomic
-
NC_060940.1 Alternate T2T-CHM13v2.0
- Range
-
2199649..2219075 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054313559.1 → XP_054169534.1 caskin-1 isoform X1