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AHRR aryl-hydrocarbon receptor repressor [ Homo sapiens (human) ]

Gene ID: 57491, updated on 21-Dec-2019

Summary

Official Symbol
AHRRprovided by HGNC
Official Full Name
aryl-hydrocarbon receptor repressorprovided by HGNC
Primary source
HGNC:HGNC:346
See related
Ensembl:ENSG00000286169 MIM:606517
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
AHH; AHHR; bHLHe77
Summary
The protein encoded by this gene participates in the aryl hydrocarbon receptor (AhR) signaling cascade, which mediates dioxin toxicity, and is involved in regulation of cell growth and differentiation. It functions as a feedback modulator by repressing AhR-dependent gene expression. Alternatively spliced transcript variants encoding different isoforms have been described for this gene. [provided by RefSeq, Jun 2011]
Expression
Broad expression in testis (RPKM 4.1), spleen (RPKM 2.9) and 21 other tissues See more
Orthologs

Genomic context

See AHRR in Genome Data Viewer
Location:
5p15.33
Exon count:
12
Annotation release Status Assembly Chr Location
109.20191205 current GRCh38.p13 (GCF_000001405.39) 5 NC_000005.10 (304176..438291)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (304291..438406)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene protein phosphatase 4 regulatory subunit 2 pseudogene Neighboring gene heart tissue-associated transcript 5 Neighboring gene programmed cell death 6 Neighboring gene mitochondrial translational initiation factor 3 pseudogene Neighboring gene AHRR intron CAGE-defined high expression enhancer Neighboring gene EXOC3 antisense RNA 1 Neighboring gene exocyst complex component 3

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Phenotypes

NHGRI GWAS Catalog

Description
Genes linked to energy metabolism and immunoregulatory mechanisms are associated with subcutaneous adipose tissue distribution in HIV-infected men.
NHGRI GWA Catalog
Genome-wide association and linkage identify modifier loci of lung disease severity in cystic fibrosis at 11p13 and 20q13.2.
NHGRI GWA Catalog

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • KIAA1234, MGC167813, MGC176630

Gene Ontology Provided by GOA

Function Evidence Code Pubs
DNA binding IEA
Inferred from Electronic Annotation
more info
 
DNA-binding transcription factor activity, RNA polymerase II-specific ISA
Inferred from Sequence Alignment
more info
 
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
negative regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
positive regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
response to xenobiotic stimulus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
xenobiotic metabolic process TAS
Traceable Author Statement
more info
 
Component Evidence Code Pubs
cytosol IDA
Inferred from Direct Assay
more info
 
nuclear chromatin ISA
Inferred from Sequence Alignment
more info
 
nucleoplasm IDA
Inferred from Direct Assay
more info
 
nucleoplasm TAS
Traceable Author Statement
more info
 

General protein information

Preferred Names
aryl hydrocarbon receptor repressor
Names
ahR repressor
aryl hydrocarbon hydroxylase regulator
class E basic helix-loop-helix protein 77
dioxin receptor repressor

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_029834.2 RefSeqGene

    Range
    5001..139116
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001377236.1NP_001364165.1  aryl hydrocarbon receptor repressor

    Status: REVIEWED

    Source sequence(s)
    AC010442, AC118458
  2. NM_001377239.1NP_001364168.1  aryl hydrocarbon receptor repressor

    Status: REVIEWED

    Source sequence(s)
    AC010442, AC118458

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20191205

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p13 Primary Assembly

    Range
    304176..438291
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001242412.1: Suppressed sequence

    Description
    NM_001242412.1: This RefSeq was removed because currently there is insufficient support for the transcript and the protein. The transcript is incomplete at the 5' end.
  2. NM_020731.4: Suppressed sequence

    Description
    NM_020731.4: This RefSeq was removed because currently there is insufficient support for the transcript and the protein. The transcript is incomplete at the 5' end.
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