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TBC1D24 TBC1 domain family member 24 [ Homo sapiens (human) ]

Gene ID: 57465, updated on 27-Nov-2024

Summary

Official Symbol
TBC1D24provided by HGNC
Official Full Name
TBC1 domain family member 24provided by HGNC
Primary source
HGNC:HGNC:29203
See related
Ensembl:ENSG00000162065 MIM:613577; AllianceGenome:HGNC:29203
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
EIM; FIME; DEE16; DOORS; TLDC6; DFNA65; DFNB86; EIEE16; EPRPDC
Summary
This gene encodes a protein with a conserved domain, referred to as the TBC domain, characteristic of proteins which interact with GTPases. TBC domain proteins may serve as GTPase-activating proteins for a particular group of GTPases, the Rab (Ras-related proteins in brain) small GTPases which are involved in the regulation of membrane trafficking. Mutations in this gene are associated with familial infantile myoclonic epilepsy. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Feb 2011]
Expression
Ubiquitous expression in brain (RPKM 4.4), kidney (RPKM 3.5) and 25 other tissues See more
Orthologs
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Genomic context

See TBC1D24 in Genome Data Viewer
Location:
16p13.3
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 16 NC_000016.10 (2475127..2505730)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 16 NC_060940.1 (2497257..2531799)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 16 NC_000016.9 (2525128..2555731)

Chromosome 16 - NC_000016.10Genomic Context describing neighboring genes Neighboring gene tubulin epsilon and delta complex 2 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 7047 Neighboring gene TEDC2 antisense RNA 1 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 7048 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 7049 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:2518620-2519163 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10269 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 7050 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 7051 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 7052 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 7053 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 7054 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 7055 Neighboring gene netrin 3 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:2532873-2533374 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:2533375-2533874 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:2546817-2547422 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:2550095-2550912 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:2557190-2557690 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:2557691-2558191 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10270 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10271 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:2561075-2561678 Neighboring gene Sharpr-MPRA regulatory region 4251 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 7056 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 7057 Neighboring gene ATPase H+ transporting V0 subunit c Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 7058 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 7059 Neighboring gene amidohydrolase domain containing 2 Neighboring gene cementum protein 1

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Clone Names

  • KIAA1171, MGC102885

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables GTPase activator activity IEA
Inferred from Electronic Annotation
more info
 
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Component Evidence Code Pubs
located_in cell junction IDA
Inferred from Direct Assay
more info
 
located_in cytoplasm IDA
Inferred from Direct Assay
more info
PubMed 
located_in cytoplasmic vesicle membrane IEA
Inferred from Electronic Annotation
more info
 
located_in neuromuscular junction ISS
Inferred from Sequence or Structural Similarity
more info
 
is_active_in plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in plasma membrane IDA
Inferred from Direct Assay
more info
 
located_in terminal bouton ISS
Inferred from Sequence or Structural Similarity
more info
 

General protein information

Preferred Names
TBC1 domain family member 24
Names
Infantile myoclonic epilepsy
TBC/LysM-associated domain containing 6
deafness, autosomal dominant 65
skywalker homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_028170.1 RefSeqGene

    Range
    4982..35585
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001199107.2NP_001186036.1  TBC1 domain family member 24 isoform 1

    See identical proteins and their annotated locations for NP_001186036.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
    Source sequence(s)
    AB032997, AC093525, AC106820, BC112389
    Consensus CDS
    CCDS55980.1
    UniProtKB/Swiss-Prot
    A0JNW3, B9A6M6, Q2KJ08, Q9ULP9
    UniProtKB/TrEMBL
    A0A2R8Y518
    Related
    ENSP00000494678.1, ENST00000646147.1
    Conserved Domains (2) summary
    smart00584
    Location:342554
    TLDc; domain in TBC and LysM domain containing proteins
    pfam00566
    Location:48253
    RabGAP-TBC; Rab-GTPase-TBC domain
  2. NM_020705.3NP_065756.1  TBC1 domain family member 24 isoform 2

    See identical proteins and their annotated locations for NP_065756.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (2) lacks an alternate in-frame exon compared to variant 1. The resulting isoform (2) has the same N- and C-termini but is shorter compared to isoform 1.
    Source sequence(s)
    AC093525, AC106820, BC112389
    Consensus CDS
    CCDS42107.1
    UniProtKB/TrEMBL
    A0A2R8Y518
    Related
    ENSP00000454408.1, ENST00000567020.7
    Conserved Domains (2) summary
    smart00584
    Location:336548
    TLDc; domain in TBC and LysM domain containing proteins
    pfam00566
    Location:48253
    RabGAP-TBC; Rab-GTPase-TBC domain

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000016.10 Reference GRCh38.p14 Primary Assembly

    Range
    2475127..2505730
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017023493.2XP_016878982.1  TBC1 domain family member 24 isoform X1

    UniProtKB/Swiss-Prot
    A0JNW3, B9A6M6, Q2KJ08, Q9ULP9
    UniProtKB/TrEMBL
    A0A2R8Y518
    Conserved Domains (2) summary
    smart00584
    Location:342554
    TLDc; domain in TBC and LysM domain containing proteins
    pfam00566
    Location:48253
    RabGAP-TBC; Rab-GTPase-TBC domain
  2. XM_017023495.2XP_016878984.1  TBC1 domain family member 24 isoform X2

    UniProtKB/TrEMBL
    A0A2R8Y518
    Related
    ENSP00000455005.2, ENST00000569874.2
    Conserved Domains (2) summary
    smart00584
    Location:336548
    TLDc; domain in TBC and LysM domain containing proteins
    pfam00566
    Location:48253
    RabGAP-TBC; Rab-GTPase-TBC domain
  3. XM_047434388.1XP_047290344.1  TBC1 domain family member 24 isoform X1

    UniProtKB/Swiss-Prot
    A0JNW3, B9A6M6, Q2KJ08, Q9ULP9
    Related
    ENSP00000457896.2, ENST00000562105.2
  4. XM_017023494.2XP_016878983.1  TBC1 domain family member 24 isoform X2

    UniProtKB/TrEMBL
    A0A2R8Y518
    Related
    ENSP00000494145.1, ENST00000643767.1
    Conserved Domains (2) summary
    smart00584
    Location:336548
    TLDc; domain in TBC and LysM domain containing proteins
    pfam00566
    Location:48253
    RabGAP-TBC; Rab-GTPase-TBC domain

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060940.1 Alternate T2T-CHM13v2.0

    Range
    2497257..2531799
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054313528.1XP_054169503.1  TBC1 domain family member 24 isoform X1

    UniProtKB/Swiss-Prot
    A0JNW3, B9A6M6, Q2KJ08, Q9ULP9
  2. XM_054313529.1XP_054169504.1  TBC1 domain family member 24 isoform X2

RNA

  1. XR_008484710.1 RNA Sequence