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Zc3h8 zinc finger CCCH type containing 8 [ Mus musculus (house mouse) ]

Gene ID: 57432, updated on 16-Oct-2021

Summary

Official Symbol
Zc3h8provided by MGI
Official Full Name
zinc finger CCCH type containing 8provided by MGI
Primary source
MGI:MGI:1930128
See related
Ensembl:ENSMUSG00000027387
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Fliz1; Zc3hdc8; AU020882; E130108N08Rik
Expression
Broad expression in CNS E11.5 (RPKM 4.3), CNS E18 (RPKM 4.1) and 24 other tissues See more
Orthologs
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Genomic context

See Zc3h8 in Genome Data Viewer
Location:
2; 2 F1
Exon count:
9
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (128768188..128786018, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (128926268..128944084, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 2 NC_000068.6 (128752004..128769756, complement)

Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene transmembrane protein 87B Neighboring gene fibulin 7 Neighboring gene predicted gene 14028 Neighboring gene zinc finger CCCH type containing 6

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

Pathways from PubChem

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Component Evidence Code Pubs
located_in Cajal body ISO
Inferred from Sequence Orthology
more info
 
located_in histone locus body ISO
Inferred from Sequence Orthology
more info
 
located_in nuclear body ISO
Inferred from Sequence Orthology
more info
 
located_in nucleoplasm ISO
Inferred from Sequence Orthology
more info
 
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in nucleus IDA
Inferred from Direct Assay
more info
PubMed 
part_of transcription elongation factor complex ISO
Inferred from Sequence Orthology
more info
 
located_in transcriptionally active chromatin ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
zinc finger CCCH domain-containing protein 8
Names
fetal liver zinc finger 1
fetal liver zinc finger 1; putative zinc finger protein FLIZ1
fetal liver zinc finger protein 1
zinc finger CCCH type domain containing 8

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_020594.2NP_065619.2  zinc finger CCCH domain-containing protein 8

    See identical proteins and their annotated locations for NP_065619.2

    Status: VALIDATED

    Source sequence(s)
    BC048687, CJ167668
    Consensus CDS
    CCDS16718.1
    UniProtKB/Swiss-Prot
    Q9JJ48
    Related
    ENSMUSP00000028866.9, ENSMUST00000028866.9
    Conserved Domains (1) summary
    smart00356
    Location:240260
    ZnF_C3H1; zinc finger

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000068.8 Reference GRCm39 C57BL/6J

    Range
    128768188..128786018 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006499947.3XP_006500010.1  zinc finger CCCH domain-containing protein 8 isoform X1

    Conserved Domains (1) summary
    COG5084
    Location:206278
    YTH1; Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]
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