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COL3A1 collagen type III alpha 1 chain [ Macaca mulatta (Rhesus monkey) ]

Gene ID: 574131, updated on 17-Aug-2024

Summary

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Official Symbol
COL3A1provided by VGNC
Official Full Name
collagen type III alpha 1 chainprovided by VGNC
Primary source
VGNC:VGNC:71296
See related
Ensembl:ENSMMUG00000021286
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Macaca mulatta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Orthologs
human mouse all
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Genomic context

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See COL3A1 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
51
Annotation release Status Assembly Chr Location
103 current Mmul_10 (GCF_003339765.1) 12 NC_041765.1 (76112246..76149763)
102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 12 NC_027904.1 (76381416..76418940)

Chromosome 12 - NC_041765.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC114671374 Neighboring gene uncharacterized protein C18orf25-like Neighboring gene GULP PTB domain containing engulfment adaptor 1 Neighboring gene microRNA mir-1245 Neighboring gene collagen type V alpha 2 chain Neighboring gene keratin, type I cytoskeletal 18 pseudogene Neighboring gene exosome complex component CSL4 pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Maternal nicotine exposure upregulates collagen gene expression in fetal monkey lung. Association with alpha7 nicotinic acetylcholine receptors. Sekhon HS, et al. Am J Respir Cell Mol Biol, 2002 Jan. PMID 11751201
  2. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables extracellular matrix structural constituent IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
collagen alpha-1(III) chain
Names
collagen alpha-1(III) chain preproprotein
collagen, type III, alpha 1 (Ehlers-Danlos syndrome type IV, autosomal dominant)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001266039.1 → NP_001252968.1  collagen alpha-1(III) chain precursor

    See identical proteins and their annotated locations for NP_001252968.1

    Status: PROVISIONAL

    Source sequence(s)
    JV046190
    UniProtKB/TrEMBL
    A0A1D5QCX5, H9YUF2
    Related
    ENSMMUP00000045894.2, ENSMMUT00000071213.2
    Conserved Domains (3) summary
    pfam01391
    Location:234 → 293
    Collagen; Collagen triple helix repeat (20 copies)
    pfam00093
    Location:32 → 88
    VWC; von Willebrand factor type C domain
    pfam01410
    Location:1233 → 1465
    COLFI; Fibrillar collagen C-terminal domain

RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmul_10 Primary Assembly

Genomic

  1. NC_041765.1 Reference Mmul_10 Primary Assembly

    Range
    76112246..76149763
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials