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SPC25 SPC25 component of NDC80 kinetochore complex [ Homo sapiens (human) ]

Gene ID: 57405, updated on 5-Apr-2020

Summary

Official Symbol
SPC25provided by HGNC
Official Full Name
SPC25 component of NDC80 kinetochore complexprovided by HGNC
Primary source
HGNC:HGNC:24031
See related
Ensembl:ENSG00000152253 MIM:609395
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
AD024; SPBC25; hSpc25
Summary
This gene encodes a protein that may be involved in kinetochore-microtubule interaction and spindle checkpoint activity. [provided by RefSeq, Jul 2008]
Expression
Broad expression in lymph node (RPKM 4.1), bone marrow (RPKM 2.8) and 19 other tissues See more
Orthologs

Genomic context

See SPC25 in Genome Data Viewer
Location:
2q24.3
Exon count:
8
Annotation release Status Assembly Chr Location
109.20200228 current GRCh38.p13 (GCF_000001405.39) 2 NC_000002.12 (168865045..168890443, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (169727401..169747277, complement)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene ceramide synthase 6 Neighboring gene RNA, U6 small nuclear 766, pseudogene Neighboring gene CERS6 antisense RNA 1 Neighboring gene nitric oxide synthase trafficking Neighboring gene glucose-6-phosphatase catalytic subunit 2 Neighboring gene ATP binding cassette subfamily B member 11

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Homology

Clone Names

  • MGC22228

Gene Ontology Provided by GOA

Function Evidence Code Pubs
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
cell division IEA
Inferred from Electronic Annotation
more info
 
chromosome segregation IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
chromosome segregation IMP
Inferred from Mutant Phenotype
more info
PubMed 
mitotic spindle organization IMP
Inferred from Mutant Phenotype
more info
PubMed 
Component Evidence Code Pubs
Ndc80 complex IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Ndc80 complex IDA
Inferred from Direct Assay
more info
PubMed 
condensed chromosome kinetochore IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
condensed chromosome kinetochore IDA
Inferred from Direct Assay
more info
PubMed 
cytosol IDA
Inferred from Direct Assay
more info
 
cytosol TAS
Traceable Author Statement
more info
 
nucleus IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
kinetochore protein Spc25
Names
2600017H08Rik
SPC25, NDC80 kinetochore complex component, homolog
spindle pole body component 25 homolog

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_020675.4NP_065726.1  kinetochore protein Spc25

    See identical proteins and their annotated locations for NP_065726.1

    Status: REVIEWED

    Source sequence(s)
    AC069137
    Consensus CDS
    CCDS2229.1
    UniProtKB/Swiss-Prot
    Q9HBM1
    Related
    ENSP00000282074.2, ENST00000282074.7
    Conserved Domains (2) summary
    pfam08234
    Location:149218
    Spindle_Spc25; Chromosome segregation protein Spc25
    cl27539
    Location:53135
    Peptidase_M23; Peptidase family M23

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p13 Primary Assembly

    Range
    168865045..168890443 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011511516.2XP_011509818.1  kinetochore protein Spc25 isoform X1

    See identical proteins and their annotated locations for XP_011509818.1

    Conserved Domains (1) summary
    pfam08234
    Location:149183
    Spindle_Spc25; Chromosome segregation protein Spc25

Reference GRCh38.p13 ALT_REF_LOCI_1

Genomic

  1. NW_003315909.1 Reference GRCh38.p13 ALT_REF_LOCI_1

    Range
    57520..77057 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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