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Cramp1 cramped chromatin regulator 1 [ Mus musculus (house mouse) ]

Gene ID: 57354, updated on 26-Sep-2022

Summary

Official Symbol
Cramp1provided by MGI
Official Full Name
cramped chromatin regulator 1provided by MGI
Primary source
MGI:MGI:1930190
See related
Ensembl:ENSMUSG00000038002 AllianceGenome:MGI:1930190
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Tce4; Cramp1l; mKIAA1426; 5830477H08Rik
Summary
Predicted to enable chromatin binding activity. Predicted to be involved in pattern specification process. Predicted to be active in nucleus. Orthologous to human CRAMP1 (cramped chromatin regulator homolog 1). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in thymus adult (RPKM 13.4), limb E14.5 (RPKM 12.0) and 28 other tissues See more
Orthologs
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Genomic context

See Cramp1 in Genome Data Viewer
Location:
17; 17 A3.3
Exon count:
24
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 17 NC_000083.7 (25180200..25234819, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 17 NC_000083.6 (24961226..25015840, complement)

Chromosome 17 - NC_000083.7Genomic Context describing neighboring genes Neighboring gene mitogen-activated protein kinase 8 interacting protein 3 Neighboring gene NME/NM23 nucleoside diphosphate kinase 3 Neighboring gene Jupiter microtubule associated homolog 2 Neighboring gene intraflagellar transport 140 Neighboring gene transmembrane protein 204 Neighboring gene telomere maintenance 2

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Transgenic (1) 
  • Endonuclease-mediated (3) 

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • KIAA1426

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 
enables chromatin binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Process Evidence Code Pubs
involved_in pattern specification process IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
protein cramped-like
Names
Crm, cramped-like
cramped chromatin regulator homolog 1
hematological and neurological expressed 1-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001403565.1NP_001390494.1  protein cramped-like

    Status: VALIDATED

    Source sequence(s)
    AC154229
    UniProtKB/Swiss-Prot
    Q6ZPR3
  2. NM_020608.3NP_065633.2  protein cramped-like

    See identical proteins and their annotated locations for NP_065633.2

    Status: VALIDATED

    Source sequence(s)
    AK030991, AK089393, AK147411, BE946250
    Consensus CDS
    CCDS50030.1
    UniProtKB/Swiss-Prot
    Q6PG95, Q6ZPR3
    Related
    ENSMUSP00000073060.7, ENSMUST00000073337.8
    Conserved Domains (2) summary
    PHA03309
    Location:441619
    PHA03309; transcriptional regulator ICP4; Provisional
    pfam04642
    Location:125205
    DUF601; Protein of unknown function, DUF601

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000083.7 Reference GRCm39 C57BL/6J

    Range
    25180200..25234819 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006524702.5XP_006524765.1  protein cramped-like isoform X1

    UniProtKB/Swiss-Prot
    Q6PG95
    Related
    ENSMUSP00000156906.2, ENSMUST00000233774.2
    Conserved Domains (2) summary
    PHA03309
    Location:441619
    PHA03309; transcriptional regulator ICP4; Provisional
    pfam04642
    Location:125205
    DUF601; Protein of unknown function, DUF601
  2. XM_006524703.5XP_006524766.1  protein cramped-like isoform X1

    See identical proteins and their annotated locations for XP_006524766.1

    UniProtKB/Swiss-Prot
    Q6PG95, Q6ZPR3
    Conserved Domains (2) summary
    PHA03309
    Location:441619
    PHA03309; transcriptional regulator ICP4; Provisional
    pfam04642
    Location:125205
    DUF601; Protein of unknown function, DUF601
  3. XM_017317589.3XP_017173078.1  protein cramped-like isoform X1

    UniProtKB/Swiss-Prot
    Q6PG95, Q6ZPR3
    Conserved Domains (2) summary
    PHA03309
    Location:441619
    PHA03309; transcriptional regulator ICP4; Provisional
    pfam04642
    Location:125205
    DUF601; Protein of unknown function, DUF601
  4. XM_006524699.4XP_006524762.1  protein cramped-like isoform X2

    Conserved Domains (2) summary
    PHA03309
    Location:491669
    PHA03309; transcriptional regulator ICP4; Provisional
    pfam04642
    Location:175255
    DUF601; Protein of unknown function, DUF601
  5. XM_011246545.3XP_011244847.1  protein cramped-like isoform X3

    Conserved Domains (2) summary
    PHA03309
    Location:441619
    PHA03309; transcriptional regulator ICP4; Provisional
    pfam04642
    Location:125205
    DUF601; Protein of unknown function, DUF601