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uncharacterized protein [ Chlamydomonas reinhardtii ]

Gene ID: 5724518, updated on 18-Sep-2024
Official Full Name
uncharacterized protein
Primary source
Phytozome:Cre14.g611300
Locus tag
CHLRE_14g611300v5
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Chlamydomonas reinhardtii (strain: CC-503 cw92 mt+)
Lineage
Eukaryota; Viridiplantae; Chlorophyta; core chlorophytes; Chlorophyceae; CS clade; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas
Old locus tag
CHLREDRAFT_152047
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Location:
chromosome: 14
Exon count:
16
Sequence:
Chromosome: 14; NC_057017.1 (493380..500751, complement)

Chromosome 14 - NC_057017.1Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein

Genomic Sequence:
NC_057017.1

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. The trafficking of bacterial type rhodopsins into the Chlamydomonas eyespot and flagella is IFT mediated. Awasthi M, et al. Sci Rep, 2016 Oct 3. PMID 27694882, Free PMC Article
  2. Glu 87 of channelrhodopsin-1 causes pH-dependent color tuning and fast photocurrent inactivation. Tsunoda SP, et al. Photochem Photobiol, 2009 Mar-Apr. PMID 19192197
  3. Channelrhodopsin-1 initiates phototaxis and photophobic responses in chlamydomonas by immediate light-induced depolarization. Berthold P, et al. Plant Cell, 2008 Jun. PMID 18552201, Free PMC Article
  4. The Chlamydomonas genome reveals the evolution of key animal and plant functions. Merchant SS, et al. Science, 2007 Oct 12. PMID 17932292, Free PMC Article
  5. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Data show there is a light-dependent, dynamic localization of rhodopsins (Channelrhodopsin 1 ChR1) between flagella and eyespot of Chlamydomonas.
    Title: The trafficking of bacterial type rhodopsins into the Chlamydomonas eyespot and flagella is IFT mediated.
  2. Data indicates that protonation/deprotonation of E87 in helix 1 alters the chromophore polarity, which shifts the absorption and modifies channel inactivation accordingly. [channelrhodopsin 1] [CHR1]
    Title: Glu 87 of channelrhodopsin-1 causes pH-dependent color tuning and fast photocurrent inactivation.
  3. Data show that CHR1 is a photochromic and protochromic sensory photoreceptor that functions as a light-activated cation channel mediating phototactic and photophobic responses via depolarizing currents in a wide range of ionic conditions. [CHR1]
    Title: Channelrhodopsin-1 initiates phototaxis and photophobic responses in chlamydomonas by immediate light-induced depolarization.
Submit: New GeneRIF Correction

Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
uncharacterized protein

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_057017.1 Reference assembly

    Range
    493380..500751 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_043069990.1 → XP_042916663.1  uncharacterized protein CHLRE_14g611300v5 [Chlamydomonas reinhardtii]

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A2K3CXC9, Q93WP2
    Conserved Domains (1) summary
    cd15241
    Location:89 → 314
    7tm_ChRs; channelrhodopsins, member of the seven-transmembrane GPCR superfamily
Nucleotide Protein
Heading Accession and Version

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