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SMAGP small cell adhesion glycoprotein [ Homo sapiens (human) ]

Gene ID: 57228, updated on 7-Jun-2020

Summary

Official Symbol
SMAGPprovided by HGNC
Official Full Name
small cell adhesion glycoproteinprovided by HGNC
Primary source
HGNC:HGNC:26918
See related
Ensembl:ENSG00000170545
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
hSMAGP
Expression
Broad expression in placenta (RPKM 50.1), esophagus (RPKM 27.8) and 16 other tissues See more
Orthologs

Genomic context

See SMAGP in Genome Data Viewer
Location:
12q13.13
Exon count:
5
Annotation release Status Assembly Chr Location
109.20200522 current GRCh38.p13 (GCF_000001405.39) 12 NC_000012.12 (51244558..51270415, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 12 NC_000012.11 (51639133..51664202, complement)

Chromosome 12 - NC_000012.12Genomic Context describing neighboring genes Neighboring gene POU class 6 homeobox 1 Neighboring gene Sharpr-MPRA regulatory region 9853 Neighboring gene DAZ associated protein 2 Neighboring gene uncharacterized LOC102723983 Neighboring gene bridging integrator 2 Neighboring gene uncharacterized LOC105369767 Neighboring gene chymotrypsin like elastase 1

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Potential readthrough

Included gene: TFCP2

Homology

Clone Names

  • MGC149453, MGC149454

Gene Ontology Provided by GOA

Function Evidence Code Pubs
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Component Evidence Code Pubs
cell junction IDA
Inferred from Direct Assay
more info
 
cytoplasmic vesicle membrane IEA
Inferred from Electronic Annotation
more info
 
integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
nucleoplasm IDA
Inferred from Direct Assay
more info
 
plasma membrane IDA
Inferred from Direct Assay
more info
 

General protein information

Preferred Names
small cell adhesion glycoprotein
Names
small cell transmembrane and glycosylated protein
small trans-membrane and glycosylated protein
small transmembrane and glycosylated protein

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001031628.2NP_001026798.1  small cell adhesion glycoprotein

    See identical proteins and their annotated locations for NP_001026798.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript. Variants 1 and 2 encode the same protein.
    Source sequence(s)
    AC139768, BC008712, CA776511
    Consensus CDS
    CCDS44889.1
    UniProtKB/Swiss-Prot
    Q0VAQ4
    Related
    ENSP00000475068.1, ENST00000603798.6
  2. NM_001033873.1NP_001029045.1  small cell adhesion glycoprotein

    See identical proteins and their annotated locations for NP_001029045.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 5' UTR compared to variant 1. Variants 1 and 2 encode the same protein.
    Source sequence(s)
    AC139768, BC008712, BG740791
    Consensus CDS
    CCDS44889.1
    UniProtKB/Swiss-Prot
    Q0VAQ4
    Related
    ENSP00000381471.2, ENST00000398453.7

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000012.12 Reference GRCh38.p13 Primary Assembly

    Range
    51244558..51270415 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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