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fbn2b fibrillin 2b [ Danio rerio (zebrafish) ]

Gene ID: 571786, updated on 6-May-2021

Summary

Official Symbol
fbn2bprovided by ZNC
Official Full Name
fibrillin 2bprovided by ZNC
Primary source
ZFIN:ZDB-GENE-090112-3
See related
Ensembl:ENSDARG00000098237
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
s; pf; fbn; fbn2
Orthologs
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Genomic context

See fbn2b in Genome Data Viewer
Location:
chromosome: 22
Exon count:
65
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 22 NC_007133.7 (4522773..4649316, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 22 NC_007133.6 (4071519..4260109, complement)
103 previous assembly Zv9 (GCF_000002035.4) 22 NC_007133.5 (3998376..4039283)

Chromosome 22 - NC_007133.7Genomic Context describing neighboring genes Neighboring gene translocase of inner mitochondrial membrane 44 homolog (yeast) Neighboring gene uncharacterized LOC108181225 Neighboring gene ceramide synthase 4a Neighboring gene kelch-like protein 12

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

General gene information

Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 
enables extracellular matrix structural constituent IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables extracellular matrix structural constituent IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in collagen-containing extracellular matrix IEA
Inferred from Electronic Annotation
more info
 
is_active_in extracellular matrix IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
fibrillin-2b; fibrillin-3
Names
fibrillin 2
pfd
puff daddy
sco
scoth tape

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001135790.1NP_001129262.1  fibrillin-2b precursor

    See identical proteins and their annotated locations for NP_001129262.1

    Status: PROVISIONAL

    Source sequence(s)
    EU449516
    UniProtKB/TrEMBL
    B6CS38
    Related
    ENSDARP00000134527.2, ENSDART00000167748.2
    Conserved Domains (9) summary
    smart00179
    Location:618658
    EGF_CA; Calcium-binding EGF-like domain
    cd00054
    Location:577607
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
    pfam00683
    Location:15531588
    TB; TB domain
    pfam06247
    Location:12501411
    Plasmod_Pvs28; Plasmodium ookinete surface protein Pvs28
    pfam07645
    Location:535575
    EGF_CA; Calcium-binding EGF domain
    pfam12662
    Location:19561979
    cEGF; Complement Clr-like EGF-like
    pfam12947
    Location:13721407
    EGF_3; EGF domain
    cl00057
    Location:24412489
    vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...
    cl21504
    Location:22982338
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007133.7 Reference GRCz11 Primary Assembly

    Range
    4522773..4649316 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021469374.1XP_021325049.1  fibrillin-3 isoform X1

    Conserved Domains (9) summary
    smart00179
    Location:618658
    EGF_CA; Calcium-binding EGF-like domain
    cd00054
    Location:577607
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
    pfam00683
    Location:15531592
    TB; TB domain
    pfam07645
    Location:535575
    EGF_CA; Calcium-binding EGF domain
    pfam12662
    Location:19561979
    cEGF; Complement Clr-like EGF-like
    pfam12947
    Location:13721407
    EGF_3; EGF domain
    pfam14670
    Location:12061241
    FXa_inhibition; Coagulation Factor Xa inhibitory site
    cl00057
    Location:24412489
    vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...
    cl21504
    Location:22982338
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
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