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CMAQ_RS05755 ATP-dependent DNA ligase [ Caldivirga maquilingensis IC-167 ]

Gene ID: 5710004, updated on 17-Sep-2016
Gene symbol
CMAQ_RS05755
Gene description
ATP-dependent DNA ligase
Locus tag
CMAQ_RS05755
Gene type
protein coding
Organism
Caldivirga maquilingensis IC-167
Lineage
Archaea; Crenarchaeota; Thermoprotei; Thermoproteales; Thermoproteaceae; Caldivirga
Old locus tag
Cmaq_1124
Sequence:
NC_009954.1 (1180673..1182484, complement)

NC_009954.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene NADH oxidase Neighboring gene acylphosphatase Neighboring gene hypothetical protein

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

  • Base excision repair, organism-specific biosystem (from KEGG)
    Base excision repair, organism-specific biosystemBase excision repair (BER) is the predominant DNA damage repair pathway for the processing of small base lesions, derived from oxidation and alkylation damages. BER is normally defined as DNA repair ...
  • Base excision repair, conserved biosystem (from KEGG)
    Base excision repair, conserved biosystemBase excision repair (BER) is the predominant DNA damage repair pathway for the processing of small base lesions, derived from oxidation and alkylation damages. BER is normally defined as DNA repair ...
  • DNA replication, organism-specific biosystem (from KEGG)
    DNA replication, organism-specific biosystemA complex network of interacting proteins and enzymes is required for DNA replication. Generally, DNA replication follows a multistep enzymatic pathway. At the DNA replication fork, a DNA helicase (D...
  • DNA replication, conserved biosystem (from KEGG)
    DNA replication, conserved biosystemA complex network of interacting proteins and enzymes is required for DNA replication. Generally, DNA replication follows a multistep enzymatic pathway. At the DNA replication fork, a DNA helicase (D...
  • Mismatch repair, organism-specific biosystem (from KEGG)
    Mismatch repair, organism-specific biosystemDNA mismatch repair (MMR) is a highly conserved biological pathway that plays a key role in maintaining genomic stability. MMR corrects DNA mismatches generated during DNA replication, thereby preven...
  • Mismatch repair, conserved biosystem (from KEGG)
    Mismatch repair, conserved biosystemDNA mismatch repair (MMR) is a highly conserved biological pathway that plays a key role in maintaining genomic stability. MMR corrects DNA mismatches generated during DNA replication, thereby preven...
  • Nucleotide excision repair, organism-specific biosystem (from KEGG)
    Nucleotide excision repair, organism-specific biosystemNucleotide excision repair (NER) is a mechanism to recognize and repair bulky DNA damage caused by compounds, environmental carcinogens, and exposure to UV-light. In humans hereditary defects in the ...
  • Nucleotide excision repair, conserved biosystem (from KEGG)
    Nucleotide excision repair, conserved biosystemNucleotide excision repair (NER) is a mechanism to recognize and repair bulky DNA damage caused by compounds, environmental carcinogens, and exposure to UV-light. In humans hereditary defects in the ...
Names
ATP-dependent DNA ligase
WP_012186171.1
  • catalyzes the ATP-dependent formation of a phosphodiester at the site of a single-strand break in duplex DNA

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_009954.1 Reference assembly

    Range
    1180673..1182484 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. WP_012186171.1 ATP-dependent DNA ligase [Caldivirga maquilingensis]

    See identical proteins and their annotated locations for WP_012186171.1

    UniProtKB/Swiss-Prot
    A8MDU6
    Conserved Domains (4) summary
    cd07969
    Location:448590
    OBF_DNA_ligase_I; The Oligonucleotide/oligosaccharide binding (OB)-fold domain of ATP-dependent DNA ligase I is a DNA-binding module that is part of the catalytic core unit
    cd07901
    Location:233442
    Adenylation_DNA_ligase_Arch_LigB; Adenylation domain of archaeal and bacterial LigB-like DNA ligases
    PRK01109
    Location:5601
    PRK01109; ATP-dependent DNA ligase; Provisional
    pfam04675
    Location:6186
    DNA_ligase_A_N; DNA ligase N terminus
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