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itga1 integrin, alpha 1 [ Danio rerio (zebrafish) ]

Gene ID: 570868, updated on 17-Nov-2020

Summary

Official Symbol
itga1provided by ZNC
Official Full Name
integrin, alpha 1provided by ZNC
Primary source
ZFIN:ZDB-GENE-091118-115
See related
Ensembl:ENSDARG00000074316
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
si:dkey-27b3.5
Orthologs

Genomic context

See itga1 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
31
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 10 NC_007121.7 (8730940..8841847)
105 previous assembly GRCz10 (GCF_000002035.5) 10 NC_007121.6 (8897358..9008102)
103 previous assembly Zv9 (GCF_000002035.4) 10 NC_007121.5 (8821393..8932253)

Chromosome 10 - NC_007121.7Genomic Context describing neighboring genes Neighboring gene si:dkey-27b3.4 Neighboring gene islet1, like Neighboring gene integrin alpha-2 Neighboring gene integrin, alpha 2 (CD49B, alpha 2 subunit of VLA-2 receptor), tandem duplicate 2

Genomic regions, transcripts, and products

Pathways from PubChem

General gene information

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
metal ion binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
cell adhesion IEA
Inferred from Electronic Annotation
more info
 
integrin-mediated signaling pathway IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
integrin complex IEA
Inferred from Electronic Annotation
more info
 
membrane IEA
Inferred from Electronic Annotation
more info
 

NCBI Reference Sequences (RefSeq)

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007121.7 Reference GRCz11 Primary Assembly

    Range
    8730940..8841847
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021479255.1XP_021334930.1  integrin alpha-1 isoform X1

    Related
    ENSDARP00000114988.1, ENSDART00000145596.3
    Conserved Domains (3) summary
    smart00191
    Location:565618
    Int_alpha; Integrin alpha (beta-propellor repeats)
    pfam08441
    Location:6611070
    Integrin_alpha2; Integrin alpha
    cl00057
    Location:167348
    vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...
  2. XM_021479256.1XP_021334931.1  integrin alpha-1 isoform X2

    Conserved Domains (3) summary
    smart00191
    Location:459512
    Int_alpha; Integrin alpha (beta-propellor repeats)
    pfam08441
    Location:555964
    Integrin_alpha2; Integrin alpha
    cl00057
    Location:61242
    vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018394768.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    69045..187162
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_694393.7XP_699485.5  integrin alpha-1 isoform X1

    Conserved Domains (3) summary
    smart00191
    Location:565618
    Int_alpha; Integrin alpha (beta-propellor repeats)
    pfam08441
    Location:6611070
    Integrin_alpha2; Integrin alpha
    cl00057
    Location:167348
    vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...
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