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supv3l1 SUV3-like helicase [ Danio rerio (zebrafish) ]

Gene ID: 570852, updated on 12-Aug-2018

Summary

Official Symbol
supv3l1provided by ZNC
Official Full Name
SUV3-like helicaseprovided by ZNC
Primary source
ZFIN:ZDB-GENE-030131-2838
See related
Ensembl:ENSDARG00000077728 Vega:OTTDARG00000027758
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio
Also known as
wu:fc19b02; wu:fe37e06
Orthologs

Genomic context

See supv3l1 in Genome Data Viewer
Location:
chromosome: 13
Exon count:
15
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 13 NC_007124.7 (23037585..23051744, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 13 NC_007124.6 (22907135..22921294, complement)

Chromosome 13 - NC_007124.7Genomic Context describing neighboring genes Neighboring gene hexokinase 1 Neighboring gene hexokinase domain containing 1 Neighboring gene VPS26, retromer complex component A Neighboring gene serglycin

Genomic regions, transcripts, and products

General gene information

Markers

Homology

Clone Names

  • MGC162283

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
3'-5' RNA helicase activity ISS
Inferred from Sequence or Structural Similarity
more info
 
ATP binding IEA
Inferred from Electronic Annotation
more info
 
ATP-dependent RNA helicase activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
ATP-dependent RNA helicase activity ISS
Inferred from Sequence or Structural Similarity
more info
 
DNA binding ISS
Inferred from Sequence or Structural Similarity
more info
 
DNA helicase activity ISS
Inferred from Sequence or Structural Similarity
more info
 
double-stranded RNA binding ISS
Inferred from Sequence or Structural Similarity
more info
 
helicase activity IEA
Inferred from Electronic Annotation
more info
 
hydrolase activity IEA
Inferred from Electronic Annotation
more info
 
hydrolase activity, acting on acid anhydrides IEA
Inferred from Electronic Annotation
more info
 
nucleotide binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
DNA recombination ISS
Inferred from Sequence or Structural Similarity
more info
 
RNA catabolic process IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
chromatin maintenance ISS
Inferred from Sequence or Structural Similarity
more info
 
liver development IMP
Inferred from Mutant Phenotype
more info
PubMed 
mitochondrial RNA 3'-end processing IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
mitochondrial RNA 3'-end processing ISS
Inferred from Sequence or Structural Similarity
more info
 
mitochondrial mRNA catabolic process ISS
Inferred from Sequence or Structural Similarity
more info
 
mitochondrial mRNA surveillance ISS
Inferred from Sequence or Structural Similarity
more info
 
mitochondrial ncRNA surveillance ISS
Inferred from Sequence or Structural Similarity
more info
 
mitochondrion morphogenesis ISS
Inferred from Sequence or Structural Similarity
more info
 
negative regulation of apoptotic process ISS
Inferred from Sequence or Structural Similarity
more info
 
positive regulation of cell growth ISS
Inferred from Sequence or Structural Similarity
more info
 
positive regulation of mitochondrial RNA catabolic process ISS
Inferred from Sequence or Structural Similarity
more info
 
Component Evidence Code Pubs
mitochondrial degradosome IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
mitochondrial degradosome ISS
Inferred from Sequence or Structural Similarity
more info
 
mitochondrial matrix ISS
Inferred from Sequence or Structural Similarity
more info
 
mitochondrial nucleoid IEA
Inferred from Electronic Annotation
more info
 
mitochondrion IEA
Inferred from Electronic Annotation
more info
 
nucleus IEA
Inferred from Electronic Annotation
more info
 
nucleus ISS
Inferred from Sequence or Structural Similarity
more info
 

General protein information

Preferred Names
ATP-dependent RNA helicase SUPV3L1, mitochondrial
Names
SUV3-like protein 1
suppressor of var1 3-like protein 1
suppressor of var1, 3-like 1
NP_001077033.1

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001083564.1NP_001077033.1  ATP-dependent RNA helicase SUPV3L1, mitochondrial precursor

    See identical proteins and their annotated locations for NP_001077033.1

    Status: PROVISIONAL

    Source sequence(s)
    BC134945
    UniProtKB/Swiss-Prot
    A4IG62
    Related
    ENSDARP00000099447.2, OTTDARP00000030048, ENSDART00000111774.3, OTTDART00000037493
    Conserved Domains (5) summary
    smart00487
    Location:185351
    DEXDc; DEAD-like helicases superfamily
    COG0513
    Location:281495
    SrmB; Superfamily II DNA and RNA helicase [Replication, recombination and repair]
    cd00046
    Location:204311
    DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
    cd00079
    Location:368484
    HELICc; Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may ...
    pfam12513
    Location:624670
    SUV3_C; Mitochondrial degradasome RNA helicase subunit C terminal

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007124.7 Reference GRCz11 Primary Assembly

    Range
    23037585..23051744 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCz11 ALT_DRER_TU_2

Genomic

  1. NW_018395309.1 Reference GRCz11 ALT_DRER_TU_2

    Range
    213440..228385 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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