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sc:d0202 sc:d0202 [ Danio rerio (zebrafish) ]

Gene ID: 569842, updated on 9-Sep-2025
Official Symbol
sc:d0202provided by ZNC
Official Full Name
sc:d0202provided by ZNC
Primary source
ZFIN:ZDB-GENE-080226-9
See related
Ensembl:ENSDARG00000078180 AllianceGenome:ZFIN:ZDB-GENE-080226-9
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Orthologs
human mouse all
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See sc:d0202 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2025_04 current GRCz12tu (GCF_049306965.1) 3 NC_133178.1 (45593450..45597669)
RS_2024_08 previous assembly GRCz11 (GCF_000002035.6) 3 NC_007114.7 (46425262..46428507)

Chromosome 3 - NC_133178.1Genomic Context describing neighboring genes Neighboring gene small nuclear ribonucleoprotein 25 Neighboring gene polymerase (RNA) III (DNA directed) polypeptide K Neighboring gene cell death-inducing p53 target 1 Neighboring gene si:ch211-66e2.3 Neighboring gene si:ch211-66e2.5 Neighboring gene uncharacterized LOC141381273

Go to nucleotide: Graphics FASTA GenBank

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Related articles in PubMed

  1. SCAR-6 elncRNA locus epigenetically regulates PROZ and modulates coagulation and vascular function. Ranjan G, et al. EMBO Rep, 2024 Nov. PMID 39358551, Free PMC Article
  2. SARS-COV-2 spike protein promotes RPE cell senescence via the ROS/P53/P21 pathway. Zhang Y, et al. Biogerontology, 2023 Oct. PMID 36738354, Free PMC Article
  3. Evolution of the inflammatory response in vertebrates: fish TNF-alpha is a powerful activator of endothelial cells but hardly activates phagocytes. Roca FJ, et al. J Immunol, 2008 Oct 1. PMID 18802111
  4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
  5. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables integrin binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within cell adhesion IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  
Preferred Names
intercellular adhesion molecule 1
Names
icam1

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001098252.3 → NP_001091722.2  intercellular adhesion molecule 1 precursor

    Status: VALIDATED

    Source sequence(s)
    JBMGRA010000003
    UniProtKB/TrEMBL
    A0A8M6Z549, X1WFG6
    Related
    ENSDARP00000128970.1, ENSDART00000153690.3
    Conserved Domains (2) summary
    pfam13895
    Location:219 → 292
    Ig_2; Immunoglobulin domain
    cl11960
    Location:112 → 211
    Ig; Immunoglobulin domain

RefSeqs of Annotated Genomes: GCF_049306965.1-RS_2025_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz12tu Primary Assembly

Genomic

  1. NC_133178.1 Reference GRCz12tu Primary Assembly

    Range
    45593450..45597669
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_073943153.1 → XP_073799254.1  intercellular adhesion molecule 1 isoform X2

    UniProtKB/TrEMBL
    A0A8M6Z549, X1WFG6

  2. XM_073943149.1 → XP_073799250.1  intercellular adhesion molecule 1 isoform X2

    UniProtKB/TrEMBL
    A0A8M6Z549, X1WFG6

  3. XM_068217429.2 → XP_068073530.1  intercellular adhesion molecule 1 isoform X1

    UniProtKB/TrEMBL
    A0AB32THW5

  4. XM_068217431.2 → XP_068073532.1  intercellular adhesion molecule 1 isoform X1

    UniProtKB/TrEMBL
    A0AB32THW5

  5. XM_068217436.2 → XP_068073537.1  intercellular adhesion molecule 1 isoform X1

    UniProtKB/TrEMBL
    A0AB32THW5
Nucleotide Protein Strain
Heading Accession and Version

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