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WDR93 WD repeat domain 93 [ Homo sapiens (human) ]

Gene ID: 56964, updated on 17-Jun-2019

Summary

Official Symbol
WDR93provided by HGNC
Official Full Name
WD repeat domain 93provided by HGNC
Primary source
HGNC:HGNC:26924
See related
Ensembl:ENSG00000140527
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in testis (RPKM 3.2), prostate (RPKM 0.4) and 3 other tissues See more
Orthologs

Genomic context

See WDR93 in Genome Data Viewer
Location:
15q26.1
Exon count:
22
Annotation release Status Assembly Chr Location
109.20190607 current GRCh38.p13 (GCF_000001405.39) 15 NC_000015.10 (89690074..89744390)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 15 NC_000015.9 (90234028..90286869)

Chromosome 15 - NC_000015.10Genomic Context describing neighboring genes Neighboring gene perilipin 1 Neighboring gene peroxisomal biogenesis factor 11 alpha Neighboring gene ribosomal protein L36a pseudogene 43 Neighboring gene RNA, U6 small nuclear 132, pseudogene Neighboring gene mesoderm posterior bHLH transcription factor 1 Neighboring gene mitochondrial ribosomal protein L15 pseudogene 1 Neighboring gene mesoderm posterior bHLH transcription factor 2

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

General gene information

Markers

Homology

Gene Ontology Provided by GOA

Function Evidence Code Pubs
NADH dehydrogenase (ubiquinone) activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Process Evidence Code Pubs
electron transport chain IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
mitochondrial respiratory chain complex I IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
WD repeat-containing protein 93

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_051641.1 RefSeqGene

    Range
    5724..58565
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001284395.2NP_001271324.1  WD repeat-containing protein 93 isoform 2

    See identical proteins and their annotated locations for NP_001271324.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) uses an alternate in-frame splice site, compared to variant 1. The encoded isoform (2) is shorter than isoform 1.
    Source sequence(s)
    AC079075, AK097525, BC064626
    Consensus CDS
    CCDS66862.1
    UniProtKB/Swiss-Prot
    Q6P2C0
    Related
    ENSP00000453971.1, ENST00000560294.5
  2. NM_001284396.2NP_001271325.1  WD repeat-containing protein 93 isoform 3

    See identical proteins and their annotated locations for NP_001271325.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) lacks multiple 3' coding exons and its 3' terminal exon extends past a splice site that is used in variant 1, resulting in a different 3' coding region and 3' UTR. The encoded isoform (3) has a distinct C-terminus and is shorter than isoform 1.
    Source sequence(s)
    AC079075, BC051026, BC064626
    Consensus CDS
    CCDS73779.1
    UniProtKB/Swiss-Prot
    Q6P2C0
    UniProtKB/TrEMBL
    B4E3E2
    Related
    ENSP00000453022.1, ENST00000558000.1
  3. NM_020212.2NP_064597.1  WD repeat-containing protein 93 isoform 1

    See identical proteins and their annotated locations for NP_064597.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript and encodes the longest isoform (1).
    Source sequence(s)
    BC064626
    Consensus CDS
    CCDS32326.1
    UniProtKB/Swiss-Prot
    Q6P2C0
    Related
    ENSP00000268130.7, ENST00000268130.12

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000015.10 Reference GRCh38.p13 Primary Assembly

    Range
    89690074..89744390
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011521794.2XP_011520096.1  WD repeat-containing protein 93 isoform X1

    See identical proteins and their annotated locations for XP_011520096.1

  2. XM_011521796.2XP_011520098.1  WD repeat-containing protein 93 isoform X3

  3. XM_006720614.1XP_006720677.1  WD repeat-containing protein 93 isoform X1

    See identical proteins and their annotated locations for XP_006720677.1

  4. XM_006720615.1XP_006720678.1  WD repeat-containing protein 93 isoform X2

  5. XM_006720618.2XP_006720681.1  WD repeat-containing protein 93 isoform X6

  6. XM_011521802.2XP_011520104.1  WD repeat-containing protein 93 isoform X7

  7. XM_017022417.1XP_016877906.1  WD repeat-containing protein 93 isoform X8

    UniProtKB/TrEMBL
    B4E3E2
  8. XM_011521795.1XP_011520097.1  WD repeat-containing protein 93 isoform X1

    See identical proteins and their annotated locations for XP_011520097.1

  9. XM_011521800.1XP_011520102.1  WD repeat-containing protein 93 isoform X5

    See identical proteins and their annotated locations for XP_011520102.1

  10. XM_017022416.1XP_016877905.1  WD repeat-containing protein 93 isoform X5

  11. XM_017022415.1XP_016877904.1  WD repeat-containing protein 93 isoform X4

  12. XM_024449994.1XP_024305762.1  WD repeat-containing protein 93 isoform X5

  13. XM_011521798.3XP_011520100.1  WD repeat-containing protein 93 isoform X5

    See identical proteins and their annotated locations for XP_011520100.1

RNA

  1. XR_931869.1 RNA Sequence

  2. XR_931870.1 RNA Sequence

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