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igsf9bb immunoglobulin superfamily, member 9Bb [ Danio rerio (zebrafish) ]

Gene ID: 569554, updated on 27-Mar-2024

Summary

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Official Symbol
igsf9bbprovided by ZNC
Official Full Name
immunoglobulin superfamily, member 9Bbprovided by ZNC
Primary source
ZFIN:ZDB-GENE-091112-15
See related
Ensembl:ENSDARG00000069467 AllianceGenome:ZFIN:ZDB-GENE-091112-15
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
si:dkey-188m6.1
Summary
Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in neuron projection. Orthologous to human IGSF9B (immunoglobulin superfamily member 9B). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
all
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Genomic context

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See igsf9bb in Genome Data Viewer
Location:
chromosome: 21
Exon count:
23
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 21 NC_007132.7 (24693770..24865458, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 21 NC_007132.6 (24657423..24828870, complement)

Chromosome 21 - NC_007132.7Genomic Context describing neighboring genes Neighboring gene Rho GTPase activating protein 32b Neighboring gene anaphase promoting complex subunit 13 Neighboring gene uncharacterized LOC103909454 Neighboring gene junctional adhesion molecule 3b

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Evolution of complexity in the zebrafish synapse proteome. Bayés À, et al. Nat Commun, 2017 Mar 2. PMID 28252024, Free PMC Article
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
  3. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  
is_active_in neuron projection IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
protein turtle homolog B-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007132.7 Reference GRCz11 Primary Assembly

    Range
    24693770..24865458 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009295418.3 → XP_009293693.1  protein turtle homolog B-like isoform X1

    UniProtKB/TrEMBL
    A0A8M3ATY0
    Conserved Domains (7) summary
    cd00096
    Location:41 → 113
    Ig; Immunoglobulin domain
    smart00408
    Location:151 → 208
    IGc2; Immunoglobulin C-2 Type
    smart00410
    Location:144 → 223
    IG_like; Immunoglobulin like
    cd00063
    Location:509 → 604
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam07679
    Location:227 → 319
    I-set; Immunoglobulin I-set domain
    pfam13895
    Location:326 → 414
    Ig_2; Immunoglobulin domain
    cl11960
    Location:440 → 504
    Ig; Immunoglobulin domain

  2. XM_692949.8 → XP_698041.5  protein turtle homolog B-like isoform X4

    UniProtKB/TrEMBL
    A0A8N7TFP3
    Conserved Domains (7) summary
    cd00096
    Location:41 → 113
    Ig; Immunoglobulin domain
    smart00408
    Location:151 → 208
    IGc2; Immunoglobulin C-2 Type
    smart00410
    Location:144 → 223
    IG_like; Immunoglobulin like
    cd00063
    Location:508 → 599
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam07679
    Location:227 → 319
    I-set; Immunoglobulin I-set domain
    pfam13895
    Location:326 → 414
    Ig_2; Immunoglobulin domain
    cl11960
    Location:263 → 319
    Ig; Immunoglobulin domain

  3. XM_009295419.3 → XP_009293694.1  protein turtle homolog B-like isoform X2

    UniProtKB/TrEMBL
    A0A8M3ALJ5
    Conserved Domains (7) summary
    cd00096
    Location:41 → 113
    Ig; Immunoglobulin domain
    smart00408
    Location:151 → 208
    IGc2; Immunoglobulin C-2 Type
    smart00410
    Location:144 → 223
    IG_like; Immunoglobulin like
    cd00063
    Location:508 → 603
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam07679
    Location:227 → 319
    I-set; Immunoglobulin I-set domain
    pfam13895
    Location:326 → 414
    Ig_2; Immunoglobulin domain
    cl11960
    Location:263 → 319
    Ig; Immunoglobulin domain

  4. XM_009295420.3 → XP_009293695.1  protein turtle homolog B-like isoform X3

    UniProtKB/TrEMBL
    A0A8M3B4S4
    Conserved Domains (7) summary
    cd00096
    Location:41 → 113
    Ig; Immunoglobulin domain
    smart00408
    Location:151 → 208
    IGc2; Immunoglobulin C-2 Type
    smart00410
    Location:144 → 223
    IG_like; Immunoglobulin like
    cd00063
    Location:509 → 600
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam07679
    Location:227 → 319
    I-set; Immunoglobulin I-set domain
    pfam13895
    Location:326 → 414
    Ig_2; Immunoglobulin domain
    cl11960
    Location:440 → 504
    Ig; Immunoglobulin domain

  5. XM_017353023.2 → XP_017208512.1  protein turtle homolog B-like isoform X5

    UniProtKB/TrEMBL
    A0A8M6Z3Y3
    Related
    ENSDARP00000117164.1, ENSDART00000142907.2

  6. XM_009295423.3 → XP_009293698.1  protein turtle homolog B-like isoform X7

    UniProtKB/TrEMBL
    A0A8M3AWX8
    Conserved Domains (6) summary
    cd00096
    Location:41 → 113
    Ig; Immunoglobulin domain
    smart00408
    Location:151 → 208
    IGc2; Immunoglobulin C-2 Type
    smart00410
    Location:431 → 504
    IG_like; Immunoglobulin like
    cd00063
    Location:509 → 604
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam07679
    Location:137 → 223
    I-set; Immunoglobulin I-set domain
    cl11960
    Location:440 → 504
    Ig; Immunoglobulin domain

  7. XM_009295422.3 → XP_009293697.1  protein turtle homolog B-like isoform X6

    UniProtKB/TrEMBL
    A0A8M3AM94
    Conserved Domains (6) summary
    cd00096
    Location:41 → 113
    Ig; Immunoglobulin domain
    smart00408
    Location:151 → 208
    IGc2; Immunoglobulin C-2 Type
    smart00410
    Location:431 → 504
    IG_like; Immunoglobulin like
    cd00063
    Location:509 → 604
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam07679
    Location:137 → 223
    I-set; Immunoglobulin I-set domain
    cl11960
    Location:440 → 504
    Ig; Immunoglobulin domain

  8. XM_009295424.3 → XP_009293699.1  protein turtle homolog B-like isoform X8

    UniProtKB/TrEMBL
    A0A8M3ATY5
    Conserved Domains (6) summary
    cd00096
    Location:41 → 113
    Ig; Immunoglobulin domain
    smart00408
    Location:151 → 208
    IGc2; Immunoglobulin C-2 Type
    smart00410
    Location:431 → 504
    IG_like; Immunoglobulin like
    cd00063
    Location:509 → 604
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam07679
    Location:137 → 223
    I-set; Immunoglobulin I-set domain
    cl11960
    Location:440 → 504
    Ig; Immunoglobulin domain
Nucleotide Protein
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