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wnt3 wingless-type MMTV integration site family, member 3 [ Danio rerio (zebrafish) ]

Gene ID: 569420, updated on 12-Sep-2021

Summary

Official Symbol
wnt3provided by ZNC
Official Full Name
wingless-type MMTV integration site family, member 3provided by ZNC
Primary source
ZFIN:ZDB-GENE-081003-1
See related
Ensembl:ENSDARG00000038990
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Orthologs
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Genomic context

See wnt3 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
4
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 12 NC_007123.7 (22258962..22304830)
105 previous assembly GRCz10 (GCF_000002035.5) 12 NC_007123.6 (22137743..22183611)
103 previous assembly Zv9 (GCF_000002035.4) 12 NC_007123.5 (23614380..23660449)

Chromosome 12 - NC_007123.7Genomic Context describing neighboring genes Neighboring gene thyroid hormone receptor alpha b Neighboring gene uncharacterized LOC101882900 Neighboring gene ORMDL sphingolipid biosynthesis regulator 3 Neighboring gene N-ethylmaleimide-sensitive factor b Neighboring gene Rho guanine nucleotide exchange factor 15b

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Pathways from PubChem

General gene information

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables cytokine activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables frizzled binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables signaling receptor binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
acts_upstream_of_or_within Wnt signaling pathway IEA
Inferred from Electronic Annotation
more info
 
involved_in canonical Wnt signaling pathway IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
involved_in cell fate commitment IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
acts_upstream_of_or_within cloaca development IMP
Inferred from Mutant Phenotype
more info
PubMed 
acts_upstream_of_or_within multicellular organism development IEA
Inferred from Electronic Annotation
more info
 
involved_in neuron differentiation IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
acts_upstream_of_or_within thalamus development IGI
Inferred from Genetic Interaction
more info
PubMed 
Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 
is_active_in extracellular space IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001114552.2NP_001108024.1  proto-oncogene Wnt-3

    See identical proteins and their annotated locations for NP_001108024.1

    Status: PROVISIONAL

    Source sequence(s)
    EU203154
    UniProtKB/TrEMBL
    B0LK22
    Related
    ENSDARP00000105032.2, ENSDART00000131175.5
    Conserved Domains (1) summary
    smart00097
    Location:47355
    WNT1; found in Wnt-1

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007123.7 Reference GRCz11 Primary Assembly

    Range
    22258962..22304830
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018394839.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    193600..237602
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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