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afg3l2 AFG3-like AAA ATPase 2 [ Danio rerio (zebrafish) ]

Gene ID: 569168, updated on 1-Aug-2018

Summary

Official Symbol
afg3l2provided by ZNC
Official Full Name
AFG3-like AAA ATPase 2provided by ZNC
Primary source
ZFIN:ZDB-GENE-070912-46
See related
Ensembl:ENSDARG00000062272 Vega:OTTDARG00000024292
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio
Also known as
si:ch211-12e1.4
Orthologs

Genomic context

See afg3l2 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
17
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 2 NC_007113.7 (21452822..21469900)
105 previous assembly GRCz10 (GCF_000002035.5) 2 NC_007113.6 (21794760..21811838)

Chromosome 2 - NC_007113.7Genomic Context describing neighboring genes Neighboring gene CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like b Neighboring gene microRNA 26a-2 Neighboring gene phospholipase C, delta 1b Neighboring gene uncharacterized LOC108179685 Neighboring gene inhibin subunit beta Ab Neighboring gene M-phase specific PLK1 interacting protein

Genomic regions, transcripts, and products

General gene information

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
ATP binding IEA
Inferred from Electronic Annotation
more info
 
metalloendopeptidase activity IEA
Inferred from Electronic Annotation
more info
 
zinc ion binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
cristae formation IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
mitochondrial fusion IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
mitochondrial protein processing IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
proteolysis IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
membrane IEA
Inferred from Electronic Annotation
more info
 
mitochondrial inner membrane IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
AFG3-like protein 2
Names
AFG3 ATPase family gene 3-like 2

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001111197.1NP_001104667.1  AFG3-like protein 2

    See identical proteins and their annotated locations for NP_001104667.1

    Status: PROVISIONAL

    Source sequence(s)
    BC155655
    UniProtKB/TrEMBL
    A9JRG9
    Related
    ENSDARP00000138163.2, OTTDARP00000025829, ENSDART00000169028.2, OTTDART00000031788
    Conserved Domains (4) summary
    TIGR01241
    Location:248741
    FtsH_fam; ATP-dependent metalloprotease FtsH
    pfam00004
    Location:340471
    AAA; ATPase family associated with various cellular activities (AAA)
    pfam01434
    Location:557739
    Peptidase_M41; Peptidase family M41
    pfam06480
    Location:141237
    FtsH_ext; FtsH Extracellular

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007113.7 Reference GRCz11 Primary Assembly

    Range
    21452822..21469900
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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