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STARD7 StAR related lipid transfer domain containing 7 [ Homo sapiens (human) ]

Gene ID: 56910, updated on 29-Mar-2020

Summary

Official Symbol
STARD7provided by HGNC
Official Full Name
StAR related lipid transfer domain containing 7provided by HGNC
Primary source
HGNC:HGNC:18063
See related
Ensembl:ENSG00000084090 MIM:616712
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
GTT1; FAME2
Expression
Ubiquitous expression in kidney (RPKM 46.9), brain (RPKM 44.7) and 25 other tissues See more
Orthologs

Genomic context

See STARD7 in Genome Data Viewer
Location:
2q11.2
Exon count:
8
Annotation release Status Assembly Chr Location
109.20200228 current GRCh38.p13 (GCF_000001405.39) 2 NC_000002.12 (96184859..96208846, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (96850597..96874573, complement)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene dual specificity phosphatase 2 Neighboring gene Sharpr-MPRA regulatory region 4518 Neighboring gene STARD7 antisense RNA 1 Neighboring gene small nucleolar RNA, H/ACA box 112 Neighboring gene Sharpr-MPRA regulatory region 4718

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Phenotypes

Associated conditions

Description Tests
Epilepsy, familial adult myoclonic 2
MedGen: C1842852 OMIM: 607876 GeneReviews: Not available
Compare labs

NHGRI GWAS Catalog

Description
Association of genome-wide variation with highly sensitive cardiac troponin-T levels in European Americans and Blacks: a meta-analysis from atherosclerosis risk in communities and cardiovascular health studies.
NHGRI GWA Catalog

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by GOA

Function Evidence Code Pubs
lipid binding IEA
Inferred from Electronic Annotation
more info
 
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
T-helper 2 cell cytokine production IEA
Inferred from Electronic Annotation
more info
 
establishment of skin barrier IEA
Inferred from Electronic Annotation
more info
 
inflammatory response IEA
Inferred from Electronic Annotation
more info
 
myeloid dendritic cell activation IEA
Inferred from Electronic Annotation
more info
 
phosphatidylcholine biosynthetic process TAS
Traceable Author Statement
more info
 
Component Evidence Code Pubs
extracellular region IEA
Inferred from Electronic Annotation
more info
 
mitochondrial outer membrane TAS
Traceable Author Statement
more info
 

General protein information

Preferred Names
stAR-related lipid transfer protein 7, mitochondrial
Names
START domain containing 7
START domain-containing protein 7
StAR-related lipid transfer (START) domain containing 7
gestational trophoblastic tumor protein 1

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_020151.3NP_064536.2  stAR-related lipid transfer protein 7, mitochondrial precursor

    See identical proteins and their annotated locations for NP_064536.2

    Status: VALIDATED

    Source sequence(s)
    BC008894, BC014274, CN394859
    Consensus CDS
    CCDS2017.2
    UniProtKB/Swiss-Prot
    Q9NQZ5
    Related
    ENSP00000338030.5, ENST00000337288.9
    Conserved Domains (1) summary
    cd08911
    Location:117325
    START_STARD7-like; Lipid-binding START domain of mammalian STARD7 and related proteins

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p13 Primary Assembly

    Range
    96184859..96208846 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011511499.2XP_011509801.1  stAR-related lipid transfer protein 7, mitochondrial isoform X1

    Conserved Domains (1) summary
    cd08911
    Location:16224
    START_STARD7-like; Lipid-binding START domain of mammalian STARD7 and related proteins

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_139267.1: Suppressed sequence

    Description
    NM_139267.1: This RefSeq was permanently suppressed because it is based on sequence from a neuroblastoma cell line.
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