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slc6a6b solute carrier family 6 member 6b [ Danio rerio (zebrafish) ]

Gene ID: 569098, updated on 16-Oct-2021

Summary

Official Symbol
slc6a6bprovided by ZNC
Official Full Name
solute carrier family 6 member 6bprovided by ZNC
Primary source
ZFIN:ZDB-GENE-030131-3077
See related
Ensembl:ENSDARG00000098438
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
tau; taut; slc6a6; fc26e12; wu:fc26e12
Annotation information
Annotation category: partial on reference assembly
Orthologs
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Genomic context

See slc6a6b in Genome Data Viewer
Location:
chromosome: 22
Exon count:
13
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 22 NC_007133.7 (31484772..31517300, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 22 NC_007133.6 (31482172..31600384, complement)
103 previous assembly Zv9 (GCF_000002035.4) 22 NC_007133.5 (34279449..34293197) , (34300415..34315835, complement)

Chromosome 22 - NC_007133.7Genomic Context describing neighboring genes Neighboring gene SEC13 homolog, nuclear pore and COPII coat complex component Neighboring gene glutamate receptor interacting protein 2b Neighboring gene uncharacterized LOC108181108 Neighboring gene LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

General gene information

Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables symporter activity IEA
Inferred from Electronic Annotation
more info
 
enables taurine:sodium symporter activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables taurine:sodium symporter activity IDA
Inferred from Direct Assay
more info
PubMed 
enables taurine:sodium symporter activity IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
acts_upstream_of_or_within neurotransmitter transport IEA
Inferred from Electronic Annotation
more info
 
involved_in sodium ion transmembrane transport IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
involved_in taurine transport IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
acts_upstream_of_or_within taurine transport IDA
Inferred from Direct Assay
more info
PubMed 
Component Evidence Code Pubs
located_in integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
is_active_in integral component of plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in integral component of plasma membrane IEA
Inferred from Electronic Annotation
more info
 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
solute carrier family 6 member 6b
Names
solute carrier family 6 (neurotransmitter transporter), member 6b
solute carrier family 6 (neurotransmitter transporter, taurine), member 6
solute carrier family 6 (neurotransmitter transporter, taurine), member 6b
taurine transporter

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001037661.1NP_001032750.1  solute carrier family 6 member 6b

    See identical proteins and their annotated locations for NP_001032750.1

    Status: PROVISIONAL

    Source sequence(s)
    AY842304
    UniProtKB/TrEMBL
    Q2VRP7
    Related
    ENSDARP00000130106.2, ENSDART00000164799.2
    Conserved Domains (1) summary
    cd11510
    Location:41582
    SLC6sbd_TauT; Na(+)- and Cl(-)-dependent taurine transporter; solute-binding domain

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007133.7 Reference GRCz11 Primary Assembly

    Range
    31484772..31517300 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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