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C15orf39 chromosome 15 open reading frame 39 [ Homo sapiens (human) ]

Gene ID: 56905, updated on 7-Jul-2019

Summary

Official Symbol
C15orf39provided by HGNC
Official Full Name
chromosome 15 open reading frame 39provided by HGNC
Primary source
HGNC:HGNC:24497
See related
Ensembl:ENSG00000167173
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Broad expression in testis (RPKM 35.8), bone marrow (RPKM 21.8) and 23 other tissues See more
Orthologs

Genomic context

See C15orf39 in Genome Data Viewer
Location:
15q24.2
Exon count:
3
Annotation release Status Assembly Chr Location
109.20190607 current GRCh38.p13 (GCF_000001405.39) 15 NC_000015.10 (75201882..75212169)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 15 NC_000015.9 (75491219..75504510)

Chromosome 15 - NC_000015.10Genomic Context describing neighboring genes Neighboring gene ribosomal protein L36a pseudogene 45 Neighboring gene uncharacterized LOC107984772 Neighboring gene taste receptor cell protein 1-like Neighboring gene nucleolar protein interacting with the FHA domain of MKI67 pseudogene 4

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • FLJ46337, MGC117209, DKFZp434H132

Gene Ontology Provided by GOA

Component Evidence Code Pubs
cytosol IDA
Inferred from Direct Assay
more info
 

General protein information

Preferred Names
uncharacterized protein C15orf39

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_015492.5NP_056307.3  uncharacterized protein C15orf39

    Status: VALIDATED

    Source sequence(s)
    AC113208
    Consensus CDS
    CCDS10276.1
    Related
    ENSP00000378438.4, ENST00000394987.5
    Conserved Domains (1) summary
    cl26464
    Location:164563
    Atrophin-1; Atrophin-1 family

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000015.10 Reference GRCh38.p13 Primary Assembly

    Range
    75201882..75212169
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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