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noctb nocturnin b [ Danio rerio (zebrafish) ]

Gene ID: 568973, updated on 1-Aug-2018

Summary

Official Symbol
noctbprovided by ZNC
Official Full Name
nocturnin bprovided by ZNC
Primary source
ZFIN:ZDB-GENE-110930-4
See related
Ensembl:ENSDARG00000078525
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio
Orthologs

Genomic context

See noctb in Genome Data Viewer
Location:
chromosome: 1
Exon count:
4
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 1 NC_007112.7 (13930662..13953733)
105 previous assembly GRCz10 (GCF_000002035.5) 1 NC_007112.6 (13244168..13267220)

Chromosome 1 - NC_007112.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101886790 Neighboring gene uncharacterized LOC101886839 Neighboring gene E74-like factor 2b (ets domain transcription factor) Neighboring gene mitochondria-localized glutamic acid-rich protein

Genomic regions, transcripts, and products

General gene information

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
poly(A)-specific ribonuclease activity IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
circadian rhythm IEA
Inferred from Electronic Annotation
more info
 

NCBI Reference Sequences (RefSeq)

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007112.7 Reference GRCz11 Primary Assembly

    Range
    13930662..13953733
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021476014.1XP_021331689.1  nocturnin isoform X2

    Related
    ENSDARP00000099045.4, ENSDART00000111026.4
    Conserved Domains (1) summary
    cd09096
    Location:79366
    Deadenylase_nocturnin; C-terminal deadenylase domain of nocturnin and related domains
  2. XM_021476012.1XP_021331687.1  nocturnin isoform X1

    Conserved Domains (1) summary
    cd09096
    Location:86373
    Deadenylase_nocturnin; C-terminal deadenylase domain of nocturnin and related domains

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018394465.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    138193..161264
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_692334.8XP_697426.3  nocturnin isoform X2

    UniProtKB/TrEMBL
    A0A0G2KRI0
    Conserved Domains (1) summary
    cd09096
    Location:79366
    Deadenylase_nocturnin; C-terminal deadenylase domain of nocturnin and related domains
  2. XM_009306789.3XP_009305064.1  nocturnin isoform X1

    Conserved Domains (1) summary
    cd09096
    Location:86373
    Deadenylase_nocturnin; C-terminal deadenylase domain of nocturnin and related domains
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