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apoc2 apolipoprotein C-II [ Danio rerio (zebrafish) ]

Gene ID: 568972, updated on 22-Aug-2021

Summary

Official Symbol
apoc2provided by ZNC
Official Full Name
apolipoprotein C-IIprovided by ZNC
Primary source
ZFIN:ZDB-GENE-030131-2168
See related
Ensembl:ENSDARG00000092155
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
fb71a04; fb98g08; wu:fb52e03; wu:fb71a04; wu:fb98g08
Orthologs
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Genomic context

See apoc2 in Genome Data Viewer
Location:
chromosome: 16
Exon count:
4
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 16 NC_007127.7 (23984755..23991161)
105 previous assembly GRCz10 (GCF_000002035.5) 16 NC_007127.6 (24069723..24076129)
103 previous assembly Zv9 (GCF_000002035.4) 16 NC_007127.5 (26224049..26230454)

Chromosome 16 - NC_007127.7Genomic Context describing neighboring genes Neighboring gene apolipoprotein C-IV Neighboring gene apolipoprotein A-II Neighboring gene basal cell adhesion molecule (Lutheran blood group) Neighboring gene ribosomal protein S19

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

General gene information

Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables enzyme activator activity IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
acts_upstream_of_or_within definitive hemopoiesis IMP
Inferred from Mutant Phenotype
more info
PubMed 
acts_upstream_of_or_within lipid metabolic process IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within lipid metabolic process IMP
Inferred from Mutant Phenotype
more info
PubMed 
acts_upstream_of_or_within lipid transport IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within lipoprotein catabolic process IMP
Inferred from Mutant Phenotype
more info
PubMed 
acts_upstream_of_or_within lipoprotein transport ISS
Inferred from Sequence or Structural Similarity
more info
 
Component Evidence Code Pubs
part_of chylomicron IEA
Inferred from Electronic Annotation
more info
 
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 
part_of high-density lipoprotein particle IEA
Inferred from Electronic Annotation
more info
 
part_of low-density lipoprotein particle IEA
Inferred from Electronic Annotation
more info
 
part_of very-low-density lipoprotein particle IEA
Inferred from Electronic Annotation
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001326448.1NP_001313377.1  apolipoprotein C-II precursor

    Status: VALIDATED

    Source sequence(s)
    BX004983, EH483599, EH498969
    UniProtKB/TrEMBL
    E9QEQ1
    Related
    ENSDARP00000112765.1, ENSDART00000145328.2
    Conserved Domains (1) summary
    pfam05355
    Location:2394
    Apo-CII; Apolipoprotein C-II

RNA

  1. NR_136943.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    BX004983, EH483599, EH498969, EH501830

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007127.7 Reference GRCz11 Primary Assembly

    Range
    23984755..23991161
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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