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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
Genomic
-
NG_029867.1 RefSeqGene
- Range
-
5216..16115
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
NM_001204158.3 → NP_001191087.1 sphingosine kinase 2 isoform b
Status: REVIEWED
- Description
- Transcript Variant: This variant (2) uses an alternate in-frame splice site in the coding region, compared to variant 1. The encoded isoform (b) is shorter than isoform a.
- Source sequence(s)
-
AK122735, AK300541, DB367710
- Consensus CDS
-
CCDS59404.1
- UniProtKB/TrEMBL
-
B3KV83
- Related
- ENSP00000470092.1, ENST00000600537.5
- Conserved Domains (1) summary
-
- pfam00781
Location:128 → 262
- DAGK_cat; Diacylglycerol kinase catalytic domain
-
NM_001204159.3 → NP_001191088.1 sphingosine kinase 2 isoform a
Status: REVIEWED
- Description
- Transcript Variant: This variant (3) differs in the 5' UTR compared to variant 1. Variants 1 and 3 both encode the same isoform (a).
- Source sequence(s)
-
AC022154, AF245447, AL136701, DB053266
- Consensus CDS
-
CCDS12727.1
- UniProtKB/Swiss-Prot
- A0T4C8, B4DU87, Q9BRN1, Q9H0Q2, Q9NRA0, Q9NWU7
- UniProtKB/TrEMBL
-
B3KV83
- Related
- ENSP00000469158.1, ENST00000598088.5
- Conserved Domains (1) summary
-
- pfam00781
Location:187 → 321
- DAGK_cat; Diacylglycerol kinase catalytic domain
-
NM_001204160.3 → NP_001191089.1 sphingosine kinase 2 isoform c
Status: REVIEWED
- Description
- Transcript Variant: This variant (4) differs in the 5' UTR, lacks a portion of the 5' coding region and initiates translation at a downstream, in-frame start codon, compared to variant 1. The encoded isoform (c) has a shorter N-terminus, compared to isoform a.
- Source sequence(s)
-
BC010671
- Consensus CDS
-
CCDS59405.1
- UniProtKB/TrEMBL
-
M0R344
- Related
- ENSP00000471205.1, ENST00000599748.5
- Conserved Domains (1) summary
-
- pfam00781
Location:151 → 285
- DAGK_cat; Diacylglycerol kinase catalytic domain
-
NM_001243876.2 → NP_001230805.1 sphingosine kinase 2 isoform d
Status: REVIEWED
- Description
- Transcript Variant: This variant (5) lacks an exon in the coding region and initiates translation at a downstream, in-frame start codon, compared to variant 1. The encoded isoform (d) has a shorter N-terminus, compared to isoform a.
- Source sequence(s)
-
AK122735, DA926908, DB367710
- Consensus CDS
-
CCDS74414.1
- UniProtKB/TrEMBL
-
E9PCV4
- Related
- ENSP00000341091.4, ENST00000340932.7
- Conserved Domains (2) summary
-
- PLN02958
Location:1 → 175
- PLN02958; diacylglycerol kinase/D-erythro-sphingosine kinase
- PHA03247
Location:149 → 310
- PHA03247; large tegument protein UL36; Provisional
-
NM_020126.5 → NP_064511.2 sphingosine kinase 2 isoform a
Status: REVIEWED
- Description
- Transcript Variant: This variant (1) represents the longest transcript and encodes the longest isoform (a). Variants 1 and 3 both encode the same isoform (a).
- Source sequence(s)
-
BC006161
- Consensus CDS
-
CCDS12727.1
- UniProtKB/Swiss-Prot
- A0T4C8, B4DU87, Q9BRN1, Q9H0Q2, Q9NRA0, Q9NWU7
- UniProtKB/TrEMBL
-
B3KV83
- Related
- ENSP00000245222.3, ENST00000245222.9
- Conserved Domains (1) summary
-
- pfam00781
Location:187 → 321
- DAGK_cat; Diacylglycerol kinase catalytic domain
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000019.10 Reference GRCh38.p14 Primary Assembly
- Range
-
48619506..48630405
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
Alternate T2T-CHM13v2.0
Genomic
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NC_060943.1 Alternate T2T-CHM13v2.0
- Range
-
51613990..51624887
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)