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clec11a C-type lectin domain containing 11A [ Danio rerio (zebrafish) ]

Gene ID: 568355, updated on 20-Feb-2026
Official Symbol
clec11aprovided by ZNC
Official Full Name
C-type lectin domain containing 11Aprovided by ZNC
Primary source
ZFIN:ZDB-GENE-130530-861
See related
Ensembl:ENSDARG00000079107 AllianceGenome:ZFIN:ZDB-GENE-130530-861
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
osteolectin
Summary
Acts upstream of or within bone mineralization and positive regulation of bone mineralization. Predicted to be located in extracellular region. Is expressed in pronephric glomerulus. Orthologous to human CLEC11A (C-type lectin domain containing 11A). [provided by Alliance of Genome Resources, Apr 2025]
Orthologs
all
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See clec11a in Genome Data Viewer
Location:
chromosome: 20
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2025_04 current GRCz12tu (GCF_049306965.1) 20 NC_133195.1 (4272227..4282845, complement)
RS_2024_08 previous assembly GRCz11 (GCF_000002035.6) 20 NC_007131.7 (3931639..3940365)

Chromosome 20 - NC_133195.1Genomic Context describing neighboring genes Neighboring gene ARV1 fatty acid homeostasis modulator Neighboring gene tetratricopeptide repeat domain 13 Neighboring gene selenoprotein L Neighboring gene si:ch73-111k22.2 Neighboring gene si:ch73-111k22.3

Go to nucleotide: Graphics FASTA GenBank

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Related articles in PubMed

  1. Identification of Fibroblast Activation Protein as an Osteogenic Suppressor and Anti-osteoporosis Drug Target. Wei H, et al. Cell Rep, 2020 Oct 13. PMID 33053358
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
  3. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables carbohydrate binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within bone mineralization IGI
Inferred from Genetic Interaction
more info
 PubMed 
acts_upstream_of_or_within positive regulation of bone mineralization IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
  
Preferred Names
C-type lectin domain family 11 member A
Names
C-type lectin domain family 11, member A
zmp:0000000858

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RefSeqs of Annotated Genomes: GCF_049306965.1-RS_2025_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz12tu Primary Assembly

Genomic

  1. NC_133195.1 Reference GRCz12tu Primary Assembly

    Range
    4272227..4282845 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_691681.8 → XP_696773.3  C-type lectin domain family 11 member A

    UniProtKB/TrEMBL
    A0A8N7T6P7

RNA

  1. XR_012396318.1 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

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