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spns2 spinster homolog 2 (Drosophila) [ Danio rerio (zebrafish) ]

Gene ID: 568117, updated on 6-May-2021

Summary

Official Symbol
spns2provided by ZNC
Official Full Name
spinster homolog 2 (Drosophila)provided by ZNC
Primary source
ZFIN:ZDB-GENE-030131-5843
See related
Ensembl:ENSDARG00000061017
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
to; toh; fi20h04; wu:fi20h04; si:dkey-7b17.4
Orthologs
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Genomic context

See spns2 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
13
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 5 NC_007116.7 (30807003..30924347, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 5 NC_007116.6 (30206850..30324194, complement)
103 previous assembly Zv9 (GCF_000002035.4) 5 NC_007116.5 (32446020..32563364, complement)

Chromosome 5 - NC_007116.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC108190168 Neighboring gene RuvB-like AAA ATPase 2 Neighboring gene spinster homolog 3 (Drosophila) Neighboring gene ubiquitin-conjugating enzyme E2G 1a (UBC7 homolog, yeast)

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

General gene information

Markers

Homology

Clone Names

  • MGC175116

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in endosome IEA
Inferred from Electronic Annotation
more info
 
located_in endosome membrane IEA
Inferred from Electronic Annotation
more info
 
located_in integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
protein spinster homolog 2
Names
protein two of hearts
two of hearts

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001083847.1NP_001077316.1  protein spinster homolog 2 isoform 1

    See identical proteins and their annotated locations for NP_001077316.1

    Status: PROVISIONAL

    Source sequence(s)
    DQ360111
    UniProtKB/Swiss-Prot
    A2SWM2
    Related
    ENSDARP00000129119.2, ENSDART00000153909.3
    Conserved Domains (2) summary
    cd06174
    Location:60439
    MFS; The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of ...
    pfam07690
    Location:61422
    MFS_1; Major Facilitator Superfamily
  2. NM_001114455.1NP_001107927.1  protein spinster homolog 2 isoform 2

    See identical proteins and their annotated locations for NP_001107927.1

    Status: PROVISIONAL

    Source sequence(s)
    BC155832
    UniProtKB/TrEMBL
    A9JRX4
    Related
    ENSDARP00000100856.3, ENSDART00000111749.4
    Conserved Domains (1) summary
    cl21472
    Location:60103
    MFS; The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of ...

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007116.7 Reference GRCz11 Primary Assembly

    Range
    30807003..30924347 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018394583.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    88988..205837 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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