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PSG11 pregnancy specific beta-1-glycoprotein 11 [ Homo sapiens (human) ]

Gene ID: 5680, updated on 25-Jan-2022

Summary

Official Symbol
PSG11provided by HGNC
Official Full Name
pregnancy specific beta-1-glycoprotein 11provided by HGNC
Primary source
HGNC:HGNC:9516
See related
Ensembl:ENSG00000243130 MIM:176401; AllianceGenome:HGNC:9516
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
PSG13; PSG14; PSBG-11; PSBG-13
Summary
The human pregnancy-specific glycoproteins (PSGs) are a group of molecules that are mainly produced by the placental syncytiotrophoblasts during pregnancy. PSGs comprise a subgroup of the carcinoembryonic antigen (CEA) family, which belongs to the immunoglobulin superfamily. For additional general information about the PSG gene family, see PSG1 (MIM 176390).[supplied by OMIM, Oct 2009]
Expression
Restricted expression toward placenta (RPKM 77.7) See more
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Genomic context

See PSG11 in Genome Data Viewer
Location:
19q13.31
Exon count:
6
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 19 NC_000019.10 (43007656..43026469, complement)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 19 NC_000019.9 (43511808..43530621, complement)

Chromosome 19 - NC_000019.10Genomic Context describing neighboring genes Neighboring gene pregnancy specific beta-1-glycoprotein 7 Neighboring gene CEA cell adhesion molecule pseudogene 7 Neighboring gene CEA cell adhesion molecule pseudogene 8 Neighboring gene pregnancy specific beta-1-glycoprotein 2

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Potential readthrough

Included gene: PSG6

Clone Names

  • MGC22484

Gene Ontology Provided by GOA

Process Evidence Code Pubs
involved_in female pregnancy TAS
Traceable Author Statement
more info
PubMed 
involved_in heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
is_active_in cell surface IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
pregnancy-specific beta-1-glycoprotein 11
Names
PS-beta-G-11
PS-beta-G-13
pregnancy-specific beta-1-glycoprotein 13

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001113410.2NP_001106881.1  pregnancy-specific beta-1-glycoprotein 11 isoform 2

    See identical proteins and their annotated locations for NP_001106881.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) lacks an alternate in-frame exon in the 5' coding region, compared to variant 1, resulting in a shorter protein (isoform 2), compared to isoform 1. Both variants 2 and 3 encode the same isoform.
    Source sequence(s)
    AC005947, BC020711, BE767872, R66665
    Consensus CDS
    CCDS12615.2
    UniProtKB/Swiss-Prot
    Q9UQ72
    Related
    ENSP00000385427.1, ENST00000403486.5
    Conserved Domains (3) summary
    smart00410
    Location:124196
    IG_like; Immunoglobulin like
    pfam13895
    Location:120198
    Ig_2; Immunoglobulin domain
    cl11960
    Location:26114
    Ig; Immunoglobulin domain
  2. NM_002785.3NP_002776.3  pregnancy-specific beta-1-glycoprotein 11 isoform 1 precursor

    See identical proteins and their annotated locations for NP_002776.3

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript and encodes the longer isoform (1).
    Source sequence(s)
    AC005947, BC020711, BE767872, BF084984, BG619770, R66665
    Consensus CDS
    CCDS12614.2
    UniProtKB/Swiss-Prot
    Q9UQ72
    Related
    ENSP00000319140.7, ENST00000320078.12
    Conserved Domains (4) summary
    cd05774
    Location:36138
    Ig_CEACAM_D1; First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)
    smart00410
    Location:246318
    IG_like; Immunoglobulin like
    pfam13895
    Location:242320
    Ig_2; Immunoglobulin domain
    cl11960
    Location:148236
    Ig; Immunoglobulin domain
  3. NM_203287.2NP_976032.2  pregnancy-specific beta-1-glycoprotein 11 isoform 2

    See identical proteins and their annotated locations for NP_976032.2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 3' UTR and lacks an alternate in-frame exon in the 5' coding region, compared to variant 1, resulting in a shorter protein (isoform 2), compared to isoform 1. Both variants 2 and 3 encode the same isoform.
    Source sequence(s)
    AC005947, BC020711, R66665
    Consensus CDS
    CCDS12615.2
    UniProtKB/Swiss-Prot
    Q9UQ72
    Related
    ENSP00000304913.6, ENST00000306322.7
    Conserved Domains (3) summary
    smart00410
    Location:124196
    IG_like; Immunoglobulin like
    pfam13895
    Location:120198
    Ig_2; Immunoglobulin domain
    cl11960
    Location:26114
    Ig; Immunoglobulin domain

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000019.10 Reference GRCh38.p13 Primary Assembly

    Range
    43007656..43026469 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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