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rorb RAR-related orphan receptor B [ Danio rerio (zebrafish) ]

Gene ID: 567943, updated on 3-Oct-2019

Summary

Official Symbol
rorbprovided by ZNC
Official Full Name
RAR-related orphan receptor Bprovided by ZNC
Primary source
ZFIN:ZDB-GENE-061204-2
See related
Ensembl:ENSDARG00000033498
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio
Also known as
rzrb; nr1f2; sb:eu943
Annotation information
Annotation category: partial on reference assembly
Orthologs

Genomic context

See rorb in Genome Data Viewer
Location:
chromosome: 5
Exon count:
9
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 5 NC_007116.7 (25366677..25377147, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 5 NC_007116.6 (24766524..24776994, complement)
103 previous assembly Zv9 (GCF_000002035.4) 5 NC_007116.5 (27011226..27021696, complement)

Chromosome 5 - NC_007116.7Genomic Context describing neighboring genes Neighboring gene wu:fa19b12 Neighboring gene uncharacterized LOC110439811 Neighboring gene transient receptor potential cation channel, subfamily M, member 6 Neighboring gene si:dkey-229d2.4 Neighboring gene annexin A1a

Genomic regions, transcripts, and products

Pathways from BioSystems

General gene information

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
DNA binding IEA
Inferred from Electronic Annotation
more info
 
DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 
metal ion binding IEA
Inferred from Electronic Annotation
more info
 
nuclear receptor activity IEA
Inferred from Electronic Annotation
more info
 
sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 
steroid hormone receptor activity IEA
Inferred from Electronic Annotation
more info
 
zinc ion binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
regulation of transcription, DNA-templated IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
nucleus IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
nuclear receptor ROR-beta
Names
retinoid-related orphan receptor b
ror beta

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001082856.1NP_001076325.1  nuclear receptor ROR-beta

    See identical proteins and their annotated locations for NP_001076325.1

    Status: PROVISIONAL

    Source sequence(s)
    EF107093
    UniProtKB/TrEMBL
    A3R3J9
    Related
    ENSDARP00000084181.3, ENSDART00000089748.4
    Conserved Domains (2) summary
    cd06939
    Location:217456
    NR_LBD_ROR_like; The ligand binding domain of Retinoid-related orphan receptors, of the nuclear receptor superfamily
    cd06968
    Location:397
    NR_DBD_ROR; DNA-binding domain of Retinoid-related orphan receptors (RORs) is composed of two C4-type zinc fingers

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007116.7 Reference GRCz11 Primary Assembly

    Range
    25366677..25377147 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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