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col6a2 collagen, type VI, alpha 2 [ Danio rerio (zebrafish) ]

Gene ID: 567771, updated on 14-Feb-2019

Summary

Official Symbol
col6a2provided by ZNC
Official Full Name
collagen, type VI, alpha 2provided by ZNC
Primary source
ZFIN:ZDB-GENE-070501-7
See related
Ensembl:ENSDARG00000061436
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio
Orthologs

Genomic context

See col6a2 in Genome Data Viewer
Location:
chromosome: 11
Exon count:
28
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 11 NC_007122.7 (33922910..33960449, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 11 NC_007122.6 (33660364..33697560, complement)
103 previous assembly Zv9 (GCF_000002035.4) 11 NC_007122.5 (34759371..34796587, complement)

Chromosome 11 - NC_007122.7Genomic Context describing neighboring genes Neighboring gene si:ch211-227n13.3 Neighboring gene phosphorylase kinase, alpha 2 (liver) Neighboring gene collagen, type VI, alpha 1 Neighboring gene tryptophan 2,3-dioxygenase b

Genomic regions, transcripts, and products

Pathways from BioSystems

General gene information

Homology

Gene Ontology Provided by ZFIN

Process Evidence Code Pubs
axonogenesis IMP
Inferred from Mutant Phenotype
more info
PubMed 
growth plate cartilage chondrocyte morphogenesis IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
muscle fiber development IMP
Inferred from Mutant Phenotype
more info
PubMed 
muscle organ development IMP
Inferred from Mutant Phenotype
more info
PubMed 
Component Evidence Code Pubs
collagen-containing extracellular matrix IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
extracellular matrix IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
extracellular space IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

NCBI Reference Sequences (RefSeq)

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007122.7 Reference GRCz11 Primary Assembly

    Range
    33922910..33960449 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021479872.1XP_021335547.1  collagen alpha-2(VI) chain isoform X1

    Conserved Domains (3) summary
    pfam01391
    Location:346404
    Collagen; Collagen triple helix repeat (20 copies)
    pfam00092
    Location:9031078
    VWA; von Willebrand factor type A domain
    cl00057
    Location:681872
    vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...
  2. XM_009306168.3XP_009304443.2  collagen alpha-2(VI) chain isoform X2

  3. XM_021479873.1XP_021335548.1  collagen alpha-2(VI) chain isoform X3

    Conserved Domains (3) summary
    pfam01391
    Location:277335
    Collagen; Collagen triple helix repeat (20 copies)
    pfam00092
    Location:8341009
    VWA; von Willebrand factor type A domain
    cl00057
    Location:612803
    vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...
  4. XM_691072.8XP_696164.2  collagen alpha-2(VI) chain isoform X4

    See identical proteins and their annotated locations for XP_696164.2

    UniProtKB/TrEMBL
    E7FCV8
    Related
    ENSDARP00000082031.4, ENSDART00000087597.6
    Conserved Domains (3) summary
    pfam01391
    Location:271329
    Collagen; Collagen triple helix repeat (20 copies)
    pfam00092
    Location:8281003
    VWA; von Willebrand factor type A domain
    cl00057
    Location:606797
    vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...
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