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Glmp glycosylated lysosomal membrane protein [ Mus musculus (house mouse) ]

Gene ID: 56700, updated on 19-Apr-2019

Summary

Official Symbol
Glmpprovided by MGI
Official Full Name
glycosylated lysosomal membrane proteinprovided by MGI
Primary source
MGI:MGI:1913318
See related
Ensembl:ENSMUSG00000001418
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
NCU-G1; AB027141; 0610031J06Rik
Expression
Ubiquitous expression in kidney adult (RPKM 105.1), placenta adult (RPKM 87.5) and 28 other tissues See more
Orthologs

Genomic context

See Glmp in Genome Data Viewer
Location:
3; 3 F1
Exon count:
6
Annotation release Status Assembly Chr Location
106 current GRCm38.p4 (GCF_000001635.24) 3 NC_000069.6 (88325023..88328631)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 3 NC_000069.5 (88128945..88132553)

Chromosome 3 - NC_000069.6Genomic Context describing neighboring genes Neighboring gene TSSK6 activating co-chaperone Neighboring gene chaperonin containing Tcp1, subunit 3 (gamma) Neighboring gene transmembrane protein 79 Neighboring gene Smg-5 homolog, nonsense mediated mRNA decay factor (C. elegans)

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
DNA-binding transcription factor activity ISO
Inferred from Sequence Orthology
more info
 
transcription regulatory region DNA binding ISO
Inferred from Sequence Orthology
more info
 
Process Evidence Code Pubs
positive regulation of transcription by RNA polymerase II ISO
Inferred from Sequence Orthology
more info
 
Component Evidence Code Pubs
cytosol ISO
Inferred from Sequence Orthology
more info
 
integral component of membrane IDA
Inferred from Direct Assay
more info
PubMed 
lysosome IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
lysosome IDA
Inferred from Direct Assay
more info
PubMed 
lysosome ISO
Inferred from Sequence Orthology
more info
 
membrane IEA
Inferred from Electronic Annotation
more info
 
nucleus ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
glycosylated lysosomal membrane protein
Names
lysosomal protein NCU-G1

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_020003.1NP_064387.1  glycosylated lysosomal membrane protein precursor

    See identical proteins and their annotated locations for NP_064387.1

    Status: PROVISIONAL

    Source sequence(s)
    AB027142
    Consensus CDS
    CCDS17469.1
    UniProtKB/Swiss-Prot
    Q9JHJ3
    Related
    ENSMUSP00000135398.1, ENSMUST00000177005.7
    Conserved Domains (1) summary
    pfam15065
    Location:54379
    NCU-G1; Lysosomal transcription factor, NCU-G1

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p4 C57BL/6J

Genomic

  1. NC_000069.6 Reference GRCm38.p4 C57BL/6J

    Range
    88325023..88328631
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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