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C11orf16 chromosome 11 open reading frame 16 [ Homo sapiens (human) ]

Gene ID: 56673, updated on 23-Nov-2021

Summary

Official Symbol
C11orf16provided by HGNC
Official Full Name
chromosome 11 open reading frame 16provided by HGNC
Primary source
HGNC:HGNC:1169
See related
Ensembl:ENSG00000176029
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Broad expression in lung (RPKM 2.0), thyroid (RPKM 1.7) and 21 other tissues See more
Orthologs
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Genomic context

See C11orf16 in Genome Data Viewer
Location:
11p15.4
Exon count:
7
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 11 NC_000011.10 (8920076..8932947, complement)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 11 NC_000011.9 (8941623..8954494, complement)

Chromosome 11 - NC_000011.10Genomic Context describing neighboring genes Neighboring gene DENN domain containing 2B Neighboring gene uncharacterized LOC105376539 Neighboring gene uncharacterized LOC102724784 Neighboring gene RNA, 5S ribosomal pseudogene 330 Neighboring gene A-kinase interacting protein 1 Neighboring gene achaete-scute family bHLH transcription factor 3 Neighboring gene TMEM9 domain family member B Neighboring gene TMEM9B antisense RNA 1

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Homology

General protein information

Preferred Names
uncharacterized protein C11orf16

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_020643.3NP_065694.2  uncharacterized protein C11orf16

    See identical proteins and their annotated locations for NP_065694.2

    Status: VALIDATED

    Source sequence(s)
    AC026894, AK074455, CA310676
    Consensus CDS
    CCDS7794.1
    UniProtKB/Swiss-Prot
    Q9NQ32
    Related
    ENSP00000318999.5, ENST00000326053.10
    Conserved Domains (1) summary
    pfam15057
    Location:85223
    DUF4537; Domain of unknown function (DUF4537)

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000011.10 Reference GRCh38.p13 Primary Assembly

    Range
    8920076..8932947 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017018013.1XP_016873502.1  uncharacterized protein C11orf16 isoform X1

    UniProtKB/Swiss-Prot
    Q9NQ32
    Conserved Domains (1) summary
    pfam15057
    Location:85223
    DUF4537; Domain of unknown function (DUF4537)
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