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NPDC1 neural proliferation, differentiation and control 1 [ Homo sapiens (human) ]

Gene ID: 56654, updated on 18-Aug-2020

Summary

Official Symbol
NPDC1provided by HGNC
Official Full Name
neural proliferation, differentiation and control 1provided by HGNC
Primary source
HGNC:HGNC:7899
See related
Ensembl:ENSG00000107281 MIM:605798
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
CAB; CAB-; CAB1; CAB-1; NPDC-1
Expression
Broad expression in prostate (RPKM 64.4), stomach (RPKM 34.1) and 22 other tissues See more
Orthologs

Genomic context

See NPDC1 in Genome Data Viewer
Location:
9q34.3
Exon count:
9
Annotation release Status Assembly Chr Location
109.20200815 current GRCh38.p13 (GCF_000001405.39) 9 NC_000009.12 (137039463..137046177, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 9 NC_000009.11 (139933909..139941147, complement)

Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene ATP binding cassette subfamily A member 2 Neighboring gene chromosome 9 putative open reading frame 139 Neighboring gene fucosyltransferase 7 Neighboring gene uncharacterized LOC105376327 Neighboring gene ectonucleoside triphosphate diphosphohydrolase 2 Neighboring gene suppressor APC domain containing 2

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Potential readthrough

Included gene: FUT7

Homology

Clone Names

  • DKFZp586J0523

Gene Ontology Provided by GOA

Function Evidence Code Pubs
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
regulation of immune response TAS
Traceable Author Statement
more info
 
Component Evidence Code Pubs
integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
plasma membrane TAS
Traceable Author Statement
more info
 

General protein information

Preferred Names
neural proliferation differentiation and control protein 1

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_015392.4NP_056207.3  neural proliferation differentiation and control protein 1 precursor

    See identical proteins and their annotated locations for NP_056207.3

    Status: VALIDATED

    Source sequence(s)
    AL807752, BC004217
    Consensus CDS
    CCDS7024.1
    UniProtKB/Swiss-Prot
    Q9NQX5
    Related
    ENSP00000360660.4, ENST00000371601.5
    Conserved Domains (1) summary
    pfam06809
    Location:1308
    NPDC1; Neural proliferation differentiation control-1 protein (NPDC1)

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20200815

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000009.12 Reference GRCh38.p13 Primary Assembly

    Range
    137039463..137046177 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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