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LINC00470 long intergenic non-protein coding RNA 470 [ Homo sapiens (human) ]

Gene ID: 56651, updated on 23-Nov-2021

Summary

Official Symbol
LINC00470provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 470provided by HGNC
Primary source
HGNC:HGNC:1225
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
C18orf2
Expression
Biased expression in testis (RPKM 1.4), placenta (RPKM 1.0) and 1 other tissue See more
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Genomic context

See LINC00470 in Genome Data Viewer
Location:
18p11.32
Exon count:
7
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 18 NC_000018.10 (1268311..1359629, complement)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 18 NC_000018.9 (1268312..1359630, complement)

Chromosome 18 - NC_000018.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105371953 Neighboring gene Sharpr-MPRA regulatory region 5202 Neighboring gene cytochrome c oxidase subunit 6C pseudogene 3 Neighboring gene RN7SK pseudogene 72 Neighboring gene ATPase family AAA domain containing 1 pseudogene Neighboring gene uncharacterized LOC105371954

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_023925.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript.
    Source sequence(s)
    AF295725, AF295730, AK057505, AP000829
  2. NR_023926.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks an internal exon and uses an alternate splice site, compared to variant 1.
    Source sequence(s)
    AF295725, AF295726, AF295730, AK057505, AP000829
  3. NR_023927.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) lacks internal exons, compared to variant 1.
    Source sequence(s)
    AF295730, AK057505, AP000829
  4. NR_110327.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (4) lacks internal exons, compared to variant 1.
    Source sequence(s)
    AP000829, AP005119

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000018.10 Reference GRCh38.p13 Primary Assembly

    Range
    1268311..1359629 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_031416.2: Suppressed sequence

    Description
    NM_031416.2: This RefSeq was permanently suppressed because currently there is support for the transcript but not for the protein.
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