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LMJF_36_3000 putative ATP-dependent RNA helicase [ Leishmania major strain Friedlin ]

Gene ID: 5655590, updated on 21-Dec-2023

Summary

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Gene symbol
LMJF_36_3000
Gene description
putative ATP-dependent RNA helicase
Locus tag
LMJF_36_3000
Gene type
protein coding
RNA name
putative ATP-dependent RNA helicase
RefSeq status
PROVISIONAL
Organism
Leishmania major strain Friedlin (strain: Friedlin)
Lineage
Eukaryota; Euglenozoa; Kinetoplastida; Trypanosomatidae; Leishmaniinae; Leishmania
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Genomic context

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Location:
chromosome: 36
Exon count:
1
Sequence:
Chromosome: 36; NC_007287.2 (1223367..1226273, complement)

Chromosome 36 - NC_007287.2Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene putative GTP-binding protein Neighboring gene putative glutathione peroxidase Neighboring gene putative exosome complex exonuclease rrp41

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_007287.2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome of the kinetoplastid parasite, Leishmania major. Ivens AC, et al. Science, 2005 Jul 15. PMID 16020728, Free PMC Article
  2. Chromosome and gene copy number variation allow major structural change between species and strains of Leishmania. Rogers MB, et al. Genome Res, 2011 Dec. PMID 22038252, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA helicase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in RNA catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in maturation of 5.8S rRNA IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
putative ATP-dependent RNA helicase
XP_001686879.1

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_007287.2 Reference assembly

    Range
    1223367..1226273 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001686827.1 → XP_001686879.1  putative ATP-dependent RNA helicase [Leishmania major strain Friedlin]

    See identical proteins and their annotated locations for XP_001686879.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    Q4Q1B9
    Conserved Domains (1) summary
    COG4581
    Location:21 → 968
    Dob10; Superfamily II RNA helicase [Replication, recombination and repair]
Nucleotide Protein
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