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agrn agrin [ Danio rerio (zebrafish) ]

Gene ID: 565373, updated on 9-Sep-2025
Official Symbol
agrnprovided by ZNC
Official Full Name
agrinprovided by ZNC
Primary source
ZFIN:ZDB-GENE-030131-1033
See related
Ensembl:ENSDARG00000079388 AllianceGenome:ZFIN:ZDB-GENE-030131-1033
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
hm:gc12; sb:eu553; wu:fb57e07
Summary
Predicted to enable calcium ion binding activity and laminin binding activity. Acts upstream of or within anterior/posterior pattern specification; nervous system development; and retina layer formation. Predicted to be located in cell periphery and membrane. Predicted to be active in extracellular region. Is expressed in several structures, including immature eye; nervous system; neural tube; notochord; and pronephric duct. Human ortholog(s) of this gene implicated in congenital myasthenic syndrome 8. Orthologous to human AGRN (agrin). [provided by Alliance of Genome Resources, Apr 2025]
Orthologs
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See agrn in Genome Data Viewer
Location:
chromosome: 23
Exon count:
43
Annotation release Status Assembly Chr Location
RS_2025_04 current GRCz12tu (GCF_049306965.1) 23 NC_133198.1 (26410799..26854945)
RS_2024_08 previous assembly GRCz11 (GCF_000002035.6) 23 NC_007134.7 (23485818..23914625)

Chromosome 23 - NC_133198.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC137489184 Neighboring gene uncharacterized LOC137489124 Neighboring gene hairy-related 9 Neighboring gene protein tyrosine phosphatase non-receptor type 11b Neighboring gene ring finger protein 223

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Markers

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 
enables laminin binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
acts_upstream_of_or_within anterior/posterior pattern specification IMP
Inferred from Mutant Phenotype
more info
PubMed 
acts_upstream_of_or_within axonogenesis IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in cell differentiation IBA
Inferred from Biological aspect of Ancestor
more info
 
acts_upstream_of_or_within cell differentiation IEA
Inferred from Electronic Annotation
more info
 
involved_in central nervous system development IBA
Inferred from Biological aspect of Ancestor
more info
 
acts_upstream_of_or_within central nervous system development IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in cytoskeleton organization IEA
Inferred from Electronic Annotation
more info
 
involved_in membrane organization IEA
Inferred from Electronic Annotation
more info
 
involved_in nervous system development IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within peripheral nervous system development IMP
Inferred from Mutant Phenotype
more info
PubMed 
acts_upstream_of_or_within receptor clustering IEA
Inferred from Electronic Annotation
more info
 
involved_in receptor clustering IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within retina layer formation IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in synapse organization IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in basement membrane IEA
Inferred from Electronic Annotation
more info
 
is_active_in extracellular region IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 
located_in synapse IEA
Inferred from Electronic Annotation
more info
 
Preferred Names
agrin

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001177452.2NP_001170923.2  agrin precursor

    Status: VALIDATED

    Source sequence(s)
    JBMGRA010000023
    Related
    ENSDARP00000101095.4, ENSDART00000114067.4

RefSeqs of Annotated Genomes: GCF_049306965.1-RS_2025_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz12tu Primary Assembly

Genomic

  1. NC_133198.1 Reference GRCz12tu Primary Assembly

    Range
    26410799..26854945
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_073938578.1XP_073794679.1  agrin isoform X17

    UniProtKB/TrEMBL
    A0AB32TDD7
  2. XM_073938589.1XP_073794690.1  agrin isoform X32

    UniProtKB/TrEMBL
    A0AB32TDD7
  3. XM_073938575.1XP_073794676.1  agrin isoform X12

    UniProtKB/TrEMBL
    A0AB32TDD7
  4. XM_073938579.1XP_073794680.1  agrin isoform X18

    UniProtKB/TrEMBL
    A0AB32TDD7
  5. XM_021469829.2XP_021325504.1  agrin isoform X1

    UniProtKB/TrEMBL
    A0A8M9PKT2, A0AB32TDD7
    Conserved Domains (9) summary
    smart00280
    Location:494539
    KAZAL; Kazal type serine protease inhibitors
    cd00054
    Location:18141845
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
    cd00104
    Location:353393
    KAZAL_FS; Kazal type serine protease inhibitors and follistatin-like domains. Kazal inhibitors inhibit serine proteases, such as, trypsin, chyomotrypsin, avian ovomucoids, and elastases. The inhibitory domain has one reactive site peptide bond, which serves the ...
    cd00110
    Location:13691519
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
    pfam00053
    Location:798840
    Laminin_EGF; Laminin EGF domain
    pfam00054
    Location:19082039
    Laminin_G_1; Laminin G domain
    pfam00008
    Location:13281356
    EGF; EGF-like domain
    pfam01390
    Location:11451228
    SEA; SEA domain
    pfam03146
    Location:43146
    NtA; Agrin NtA domain
  6. XM_073938572.1XP_073794673.1  agrin isoform X9

    UniProtKB/TrEMBL
    A0AB32TDD7
  7. XM_009296860.4XP_009295135.1  agrin isoform X6

    UniProtKB/TrEMBL
    A0A8M3B648, A0AB32TDD7
    Conserved Domains (9) summary
    smart00280
    Location:494539
    KAZAL; Kazal type serine protease inhibitors
    cd00054
    Location:18141845
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
    cd00104
    Location:353393
    KAZAL_FS; Kazal type serine protease inhibitors and follistatin-like domains. Kazal inhibitors inhibit serine proteases, such as, trypsin, chyomotrypsin, avian ovomucoids, and elastases. The inhibitory domain has one reactive site peptide bond, which serves the ...
    cd00110
    Location:13691519
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
    pfam00008
    Location:13281356
    EGF; EGF-like domain
    pfam00053
    Location:798840
    Laminin_EGF; Laminin EGF domain
    pfam00054
    Location:19002031
    Laminin_G_1; Laminin G domain
    pfam01390
    Location:11451227
    SEA; SEA domain
    pfam03146
    Location:43146
    NtA; Agrin NtA domain
  8. XM_009296863.4XP_009295138.1  agrin isoform X13

    UniProtKB/TrEMBL
    A0A8M3ANN0, A0AB32TDD7
    Conserved Domains (9) summary
    smart00280
    Location:494539
    KAZAL; Kazal type serine protease inhibitors
    cd00054
    Location:18141845
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
    cd00104
    Location:353393
    KAZAL_FS; Kazal type serine protease inhibitors and follistatin-like domains. Kazal inhibitors inhibit serine proteases, such as, trypsin, chyomotrypsin, avian ovomucoids, and elastases. The inhibitory domain has one reactive site peptide bond, which serves the ...
    cd00110
    Location:13691519
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
    pfam00008
    Location:13281356
    EGF; EGF-like domain
    pfam00053
    Location:798840
    Laminin_EGF; Laminin EGF domain
    pfam00054
    Location:18892020
    Laminin_G_1; Laminin G domain
    pfam01390
    Location:11451227
    SEA; SEA domain
    pfam03146
    Location:43146
    NtA; Agrin NtA domain
  9. XM_021469831.2XP_021325506.1  agrin isoform X3

    UniProtKB/TrEMBL
    A0A8M9PT52, A0AB32TDD7
    Conserved Domains (9) summary
    smart00280
    Location:494539
    KAZAL; Kazal type serine protease inhibitors
    cd00054
    Location:18101841
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
    cd00104
    Location:353393
    KAZAL_FS; Kazal type serine protease inhibitors and follistatin-like domains. Kazal inhibitors inhibit serine proteases, such as, trypsin, chyomotrypsin, avian ovomucoids, and elastases. The inhibitory domain has one reactive site peptide bond, which serves the ...
    cd00110
    Location:13691519
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
    pfam00053
    Location:798840
    Laminin_EGF; Laminin EGF domain
    pfam00054
    Location:19042035
    Laminin_G_1; Laminin G domain
    pfam00008
    Location:13281356
    EGF; EGF-like domain
    pfam01390
    Location:11451228
    SEA; SEA domain
    pfam03146
    Location:43146
    NtA; Agrin NtA domain
  10. XM_073938573.1XP_073794674.1  agrin isoform X10

    UniProtKB/TrEMBL
    A0AB32TDD7
  11. XM_009296864.4XP_009295139.1  agrin isoform X14

    UniProtKB/TrEMBL
    A0A8M3AYE9, A0AB32TDD7
    Conserved Domains (9) summary
    smart00280
    Location:494539
    KAZAL; Kazal type serine protease inhibitors
    cd00054
    Location:18101841
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
    cd00104
    Location:353393
    KAZAL_FS; Kazal type serine protease inhibitors and follistatin-like domains. Kazal inhibitors inhibit serine proteases, such as, trypsin, chyomotrypsin, avian ovomucoids, and elastases. The inhibitory domain has one reactive site peptide bond, which serves the ...
    cd00110
    Location:13691519
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
    pfam00008
    Location:13281356
    EGF; EGF-like domain
    pfam00053
    Location:798840
    Laminin_EGF; Laminin EGF domain
    pfam00054
    Location:18852016
    Laminin_G_1; Laminin G domain
    pfam01390
    Location:11451227
    SEA; SEA domain
    pfam03146
    Location:43146
    NtA; Agrin NtA domain
  12. XM_021469836.2XP_021325511.1  agrin isoform X23

    UniProtKB/TrEMBL
    A0A8M9PT59, A0AB32TDD7
    Conserved Domains (9) summary
    smart00280
    Location:494539
    KAZAL; Kazal type serine protease inhibitors
    cd00054
    Location:17051736
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
    cd00104
    Location:353393
    KAZAL_FS; Kazal type serine protease inhibitors and follistatin-like domains. Kazal inhibitors inhibit serine proteases, such as, trypsin, chyomotrypsin, avian ovomucoids, and elastases. The inhibitory domain has one reactive site peptide bond, which serves the ...
    cd00110
    Location:12601410
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
    pfam00053
    Location:798840
    Laminin_EGF; Laminin EGF domain
    pfam00054
    Location:17991930
    Laminin_G_1; Laminin G domain
    pfam00008
    Location:12191247
    EGF; EGF-like domain
    pfam01390
    Location:10361119
    SEA; SEA domain
    pfam03146
    Location:43146
    NtA; Agrin NtA domain
  13. XM_073938587.1XP_073794688.1  agrin isoform X30

    UniProtKB/TrEMBL
    A0AB32TDD7
  14. XM_021469830.2XP_021325505.1  agrin isoform X2

    UniProtKB/TrEMBL
    A0A8M9PWJ8, A0AB32TDD7
    Conserved Domains (9) summary
    smart00280
    Location:494539
    KAZAL; Kazal type serine protease inhibitors
    cd00054
    Location:18131844
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
    cd00104
    Location:353393
    KAZAL_FS; Kazal type serine protease inhibitors and follistatin-like domains. Kazal inhibitors inhibit serine proteases, such as, trypsin, chyomotrypsin, avian ovomucoids, and elastases. The inhibitory domain has one reactive site peptide bond, which serves the ...
    cd00110
    Location:13681518
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
    pfam00053
    Location:797839
    Laminin_EGF; Laminin EGF domain
    pfam00054
    Location:19072038
    Laminin_G_1; Laminin G domain
    pfam00008
    Location:13271355
    EGF; EGF-like domain
    pfam01390
    Location:11441227
    SEA; SEA domain
    pfam03146
    Location:43146
    NtA; Agrin NtA domain
  15. XM_073938569.1XP_073794670.1  agrin isoform X4

    UniProtKB/TrEMBL
    A0AB32TDD7
  16. XM_073938576.1XP_073794677.1  agrin isoform X15

    UniProtKB/TrEMBL
    A0AB32TDD7
  17. XM_073938582.1XP_073794683.1  agrin isoform X24

    UniProtKB/TrEMBL
    A0AB32TDD7
  18. XM_073938588.1XP_073794689.1  agrin isoform X31

    UniProtKB/TrEMBL
    A0AB32TDD7
  19. XM_073938592.1XP_073794693.1  agrin isoform X35

  20. XM_021469832.2XP_021325507.1  agrin isoform X5

    UniProtKB/TrEMBL
    A0A8M9P562, A0AB32TDD7
    Conserved Domains (9) summary
    smart00280
    Location:487532
    KAZAL; Kazal type serine protease inhibitors
    cd00054
    Location:18071838
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
    cd00104
    Location:346386
    KAZAL_FS; Kazal type serine protease inhibitors and follistatin-like domains. Kazal inhibitors inhibit serine proteases, such as, trypsin, chyomotrypsin, avian ovomucoids, and elastases. The inhibitory domain has one reactive site peptide bond, which serves the ...
    cd00110
    Location:13621512
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
    pfam00053
    Location:791833
    Laminin_EGF; Laminin EGF domain
    pfam00054
    Location:19012032
    Laminin_G_1; Laminin G domain
    pfam00008
    Location:13211349
    EGF; EGF-like domain
    pfam01390
    Location:11381221
    SEA; SEA domain
    pfam03146
    Location:43146
    NtA; Agrin NtA domain
  21. XM_073938571.1XP_073794672.1  agrin isoform X8

    UniProtKB/TrEMBL
    A0AB32TDD7
  22. XM_073938570.1XP_073794671.1  agrin isoform X7

    UniProtKB/TrEMBL
    A0AB32TDD7
  23. XM_073938574.1XP_073794675.1  agrin isoform X11

    UniProtKB/TrEMBL
    A0AB32TDD7
  24. XM_073938577.1XP_073794678.1  agrin isoform X16

    UniProtKB/TrEMBL
    A0AB32TDD7
  25. XM_073938583.1XP_073794684.1  agrin isoform X25

    UniProtKB/TrEMBL
    A0AB32TDD7
  26. XM_021469834.3XP_021325509.1  agrin isoform X19

    UniProtKB/TrEMBL
    A0A8M9PKT9, A0AB32TDD7
    Conserved Domains (8) summary
    smart00280
    Location:398443
    KAZAL; Kazal type serine protease inhibitors
    cd00054
    Location:17181749
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
    cd00104
    Location:257297
    KAZAL_FS; Kazal type serine protease inhibitors and follistatin-like domains. Kazal inhibitors inhibit serine proteases, such as, trypsin, chyomotrypsin, avian ovomucoids, and elastases. The inhibitory domain has one reactive site peptide bond, which serves the ...
    cd00110
    Location:12731423
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
    pfam00053
    Location:702744
    Laminin_EGF; Laminin EGF domain
    pfam00054
    Location:18121943
    Laminin_G_1; Laminin G domain
    pfam00008
    Location:12321260
    EGF; EGF-like domain
    pfam01390
    Location:10491132
    SEA; SEA domain
  27. XM_073938584.1XP_073794685.1  agrin isoform X26

    UniProtKB/TrEMBL
    A0AB32TDD7
  28. XM_073938580.1XP_073794681.1  agrin isoform X20

    UniProtKB/TrEMBL
    A0AB32TDD7
  29. XM_073938585.1XP_073794686.1  agrin isoform X27

    UniProtKB/TrEMBL
    A0AB32TDD7
  30. XM_073938593.1XP_073794694.1  agrin isoform X36

  31. XM_021469835.3XP_021325510.1  agrin isoform X21

    UniProtKB/TrEMBL
    A0A8M9PWK3, A0AB32TDD7
    Conserved Domains (8) summary
    smart00280
    Location:387432
    KAZAL; Kazal type serine protease inhibitors
    cd00054
    Location:17071738
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
    cd00104
    Location:246286
    KAZAL_FS; Kazal type serine protease inhibitors and follistatin-like domains. Kazal inhibitors inhibit serine proteases, such as, trypsin, chyomotrypsin, avian ovomucoids, and elastases. The inhibitory domain has one reactive site peptide bond, which serves the ...
    cd00110
    Location:12621412
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
    pfam00053
    Location:691733
    Laminin_EGF; Laminin EGF domain
    pfam00054
    Location:18011932
    Laminin_G_1; Laminin G domain
    pfam00008
    Location:12211249
    EGF; EGF-like domain
    pfam01390
    Location:10381121
    SEA; SEA domain
  32. XM_009296867.5XP_009295142.1  agrin isoform X28

    UniProtKB/TrEMBL
    A0A0R4IJ40, A0A8M3AVD3, A0AB32TDD7
    Related
    ENSDARP00000133459.1
    Conserved Domains (8) summary
    smart00280
    Location:387432
    KAZAL; Kazal type serine protease inhibitors
    cd00054
    Location:17031734
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
    cd00104
    Location:246286
    KAZAL_FS; Kazal type serine protease inhibitors and follistatin-like domains. Kazal inhibitors inhibit serine proteases, such as, trypsin, chyomotrypsin, avian ovomucoids, and elastases. The inhibitory domain has one reactive site peptide bond, which serves the ...
    cd00110
    Location:12621412
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
    pfam00008
    Location:12211249
    EGF; EGF-like domain
    pfam00053
    Location:691733
    Laminin_EGF; Laminin EGF domain
    pfam00054
    Location:17781909
    Laminin_G_1; Laminin G domain
    pfam01390
    Location:10381120
    SEA; SEA domain
  33. XM_073938590.1XP_073794691.1  agrin isoform X33

    UniProtKB/TrEMBL
    A0AB32TDD7
  34. XM_073938581.1XP_073794682.1  agrin isoform X22

    UniProtKB/TrEMBL
    A0AB32TDD7
  35. XM_073938586.1XP_073794687.1  agrin isoform X29

    UniProtKB/TrEMBL
    A0AB32TDD7
  36. XM_073938591.1XP_073794692.1  agrin isoform X34

    UniProtKB/TrEMBL
    A0AB32TDD7

RNA

  1. XR_012398373.1 RNA Sequence