Format

Send to:

Choose Destination

ebf1a EBF transcription factor 1a [ Danio rerio (zebrafish) ]

Gene ID: 565310, updated on 25-Aug-2020

Summary

Official Symbol
ebf1aprovided by ZNC
Official Full Name
EBF transcription factor 1aprovided by ZNC
Primary source
ZFIN:ZDB-GENE-081028-51
See related
Ensembl:ENSDARG00000099849
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
EBF1; sb:eu42; sb:eu427; si:ch73-38f1.1
Orthologs

Genomic context

See ebf1a in Genome Data Viewer
Location:
chromosome: 14
Exon count:
17
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 14 NC_007125.7 (35023930..35250635)
105 previous assembly GRCz10 (GCF_000002035.5) 14 NC_007125.6 (34683579..34907533)
103 previous assembly Zv9 (GCF_000002035.4) 14 NC_007125.5 (36182283..36406762)

Chromosome 14 - NC_007125.7Genomic Context describing neighboring genes Neighboring gene interleukin 12Ba Neighboring gene ring finger protein 145a Neighboring gene clathrin interactor 1a Neighboring gene LSM11, U7 small nuclear RNA associated Neighboring gene zinc finger and BTB domain containing 3

Genomic regions, transcripts, and products

Pathways from PubChem

General gene information

Markers

Homology

General protein information

Preferred Names
transcription factor COE1-A; transcription factor COE1
Names
early B cell factor 1-A
early B cell factor 1a

NCBI Reference Sequences (RefSeq)

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007125.7 Reference GRCz11 Primary Assembly

    Range
    35023930..35250635
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009291207.3XP_009289482.1  transcription factor COE1 isoform X1

    Conserved Domains (3) summary
    cd01175
    Location:264348
    IPT_COE; IPT domain of the COE family (Col/Olf-1/EBF) of non-basic, helix-loop-helix (HLH)-containing transcription factors. COE family proteins are all transcription factors and play an important role in variety of developmental processes. Mouse EBF is involved ...
    pfam16422
    Location:21247
    COE1_DBD; Transcription factor COE1 DNA-binding domain
    pfam16423
    Location:349392
    COE1_HLH; Transcription factor COE1 helix-loop-helix domain
  2. XM_017359149.2XP_017214638.1  transcription factor COE1 isoform X2

  3. XM_009291209.3XP_009289484.1  transcription factor COE1 isoform X5

    Related
    ENSDARP00000139773.2, ENSDART00000170631.2
    Conserved Domains (3) summary
    cd01175
    Location:264348
    IPT_COE; IPT domain of the COE family (Col/Olf-1/EBF) of non-basic, helix-loop-helix (HLH)-containing transcription factors. COE family proteins are all transcription factors and play an important role in variety of developmental processes. Mouse EBF is involved ...
    pfam16422
    Location:21247
    COE1_DBD; Transcription factor COE1 DNA-binding domain
    pfam16423
    Location:349392
    COE1_HLH; Transcription factor COE1 helix-loop-helix domain
  4. XM_009291208.3XP_009289483.1  transcription factor COE1 isoform X3

    UniProtKB/TrEMBL
    A0A0R4IWS1
    Conserved Domains (3) summary
    cd01175
    Location:262346
    IPT_COE; IPT domain of the COE family (Col/Olf-1/EBF) of non-basic, helix-loop-helix (HLH)-containing transcription factors. COE family proteins are all transcription factors and play an important role in variety of developmental processes. Mouse EBF is involved ...
    pfam16422
    Location:21247
    COE1_DBD; Transcription factor COE1 DNA-binding domain
    pfam16423
    Location:347390
    COE1_HLH; Transcription factor COE1 helix-loop-helix domain
  5. XM_017359150.2XP_017214639.1  transcription factor COE1 isoform X4

  6. XM_009291210.3XP_009289485.1  transcription factor COE1 isoform X6

    UniProtKB/TrEMBL
    A0A0R4IWI1
    Related
    ENSDARP00000139648.1, ENSDART00000172171.2
    Conserved Domains (3) summary
    cd01175
    Location:262346
    IPT_COE; IPT domain of the COE family (Col/Olf-1/EBF) of non-basic, helix-loop-helix (HLH)-containing transcription factors. COE family proteins are all transcription factors and play an important role in variety of developmental processes. Mouse EBF is involved ...
    pfam16422
    Location:21247
    COE1_DBD; Transcription factor COE1 DNA-binding domain
    pfam16423
    Location:347390
    COE1_HLH; Transcription factor COE1 helix-loop-helix domain
Support Center