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gper1 G protein-coupled estrogen receptor 1 [ Danio rerio (zebrafish) ]

Gene ID: 565271, updated on 25-Aug-2020

Summary

Official Symbol
gper1provided by ZNC
Official Full Name
G protein-coupled estrogen receptor 1provided by ZNC
Primary source
ZFIN:ZDB-GENE-090311-1
See related
Ensembl:ENSDARG00000074661
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
gp; gpr; gper; gpr30
Orthologs

Genomic context

See gper1 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
3
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 3 NC_007114.7 (45756605..45770089)
105 previous assembly GRCz10 (GCF_000002035.5) 3 NC_007114.6 (47804271..47817755)
103 previous assembly Zv9 (GCF_000002035.4) 3 NC_007114.5 (45794718..45808202)

Chromosome 3 - NC_007114.7Genomic Context describing neighboring genes Neighboring gene microRNA mir-2195 Neighboring gene G protein-coupled receptor 146 Neighboring gene H3 histone, family 3A Neighboring gene unk like zinc finger Neighboring gene uncharacterized LOC101882899

Genomic regions, transcripts, and products

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Pathways from PubChem

General gene information

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
G protein-coupled receptor activity IEA
Inferred from Electronic Annotation
more info
 
estrogen receptor activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
estrogen receptor activity IDA
Inferred from Direct Assay
more info
PubMed 
steroid binding IDA
Inferred from Direct Assay
more info
PubMed 
steroid hormone binding ISS
Inferred from Sequence or Structural Similarity
more info
 
Process Evidence Code Pubs
G protein-coupled receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 
apoptotic process IEA
Inferred from Electronic Annotation
more info
 
brain development IDA
Inferred from Direct Assay
more info
PubMed 
cell cycle IEA
Inferred from Electronic Annotation
more info
 
cell differentiation IEA
Inferred from Electronic Annotation
more info
 
cellular response to estradiol stimulus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
cellular response to estradiol stimulus IDA
Inferred from Direct Assay
more info
PubMed 
heart contraction IMP
Inferred from Mutant Phenotype
more info
PubMed 
multicellular organism development IEA
Inferred from Electronic Annotation
more info
 
negative regulation of meiotic cell cycle IDA
Inferred from Direct Assay
more info
PubMed 
negative regulation of neuron apoptotic process IDA
Inferred from Direct Assay
more info
PubMed 
negative regulation of oocyte maturation IDA
Inferred from Direct Assay
more info
PubMed 
nervous system development IEA
Inferred from Electronic Annotation
more info
 
positive regulation of embryonic development IMP
Inferred from Mutant Phenotype
more info
PubMed 
positive regulation of neural precursor cell proliferation IDA
Inferred from Direct Assay
more info
PubMed 
positive regulation of protein phosphorylation IDA
Inferred from Direct Assay
more info
PubMed 
positive regulation of transcription by RNA polymerase II IDA
Inferred from Direct Assay
more info
PubMed 
signal transduction IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 
Golgi membrane IEA
Inferred from Electronic Annotation
more info
 
axon IEA
Inferred from Electronic Annotation
more info
 
basolateral plasma membrane IEA
Inferred from Electronic Annotation
more info
 
cell junction IEA
Inferred from Electronic Annotation
more info
 
cell projection IEA
Inferred from Electronic Annotation
more info
 
cytoplasm IEA
Inferred from Electronic Annotation
more info
 
cytoplasmic vesicle IEA
Inferred from Electronic Annotation
more info
 
cytoplasmic vesicle membrane IEA
Inferred from Electronic Annotation
more info
 
cytoskeleton IEA
Inferred from Electronic Annotation
more info
 
dendritic spine membrane IEA
Inferred from Electronic Annotation
more info
 
early endosome IEA
Inferred from Electronic Annotation
more info
 
endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 
endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 
endosome IEA
Inferred from Electronic Annotation
more info
 
integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
membrane IEA
Inferred from Electronic Annotation
more info
 
mitochondrial membrane IEA
Inferred from Electronic Annotation
more info
 
mitochondrion IEA
Inferred from Electronic Annotation
more info
 
nucleus IEA
Inferred from Electronic Annotation
more info
 
perinuclear region of cytoplasm IEA
Inferred from Electronic Annotation
more info
 
plasma membrane IDA
Inferred from Direct Assay
more info
PubMed 
plasma membrane IEA
Inferred from Electronic Annotation
more info
 
postsynaptic density IEA
Inferred from Electronic Annotation
more info
 
postsynaptic membrane IEA
Inferred from Electronic Annotation
more info
 
recycling endosome IEA
Inferred from Electronic Annotation
more info
 
synapse IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
G-protein coupled estrogen receptor 1
Names
G protein-coupled receptor 30

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001128723.1NP_001122195.1  G-protein coupled estrogen receptor 1

    See identical proteins and their annotated locations for NP_001122195.1

    Status: PROVISIONAL

    Source sequence(s)
    EU652771
    UniProtKB/Swiss-Prot
    B3G515
    Related
    ENSDARP00000156576.1, ENSDART00000189772.1
    Conserved Domains (1) summary
    pfam00001
    Location:61309
    7tm_1; 7 transmembrane receptor (rhodopsin family)

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007114.7 Reference GRCz11 Primary Assembly

    Range
    45756605..45770089
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009299734.3XP_009298009.1  G-protein coupled estrogen receptor 1 isoform X1

    See identical proteins and their annotated locations for XP_009298009.1

    UniProtKB/Swiss-Prot
    B3G515
    Related
    ENSDARP00000070486.2, ENSDART00000076007.4
    Conserved Domains (1) summary
    pfam00001
    Location:61309
    7tm_1; 7 transmembrane receptor (rhodopsin family)
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