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Slc22a21 solute carrier family 22 (organic cation transporter), member 21 [ Mus musculus (house mouse) ]

Gene ID: 56517, updated on 22-May-2018

Summary

Official Symbol
Slc22a21provided by MGI
Official Full Name
solute carrier family 22 (organic cation transporter), member 21provided by MGI
Primary source
MGI:MGI:1929481
See related
Ensembl:ENSMUSG00000063652 Vega:OTTMUSG00000005655
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Octn3; Slc22a9
Expression
Broad expression in testis adult (RPKM 14.7), kidney adult (RPKM 7.9) and 20 other tissues See more

Genomic context

See Slc22a21 in Genome Data Viewer
Location:
11; 11 B1.3
Exon count:
12
Annotation release Status Assembly Chr Location
106 current GRCm38.p4 (GCF_000001635.24) 11 NC_000077.6 (53949961..53980820, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 11 NC_000077.5 (53764326..53793529, complement)

Chromosome 11 - NC_000077.6Genomic Context describing neighboring genes Neighboring gene solute carrier family 22 (organic cation transporter), member 5 Neighboring gene solute carrier family 22 (organic cation transporter), member 4 pseudogene Neighboring gene predicted gene 12219 Neighboring gene predicted gene, 30927 Neighboring gene solute carrier family 22 (organic cation transporter), member 4 Neighboring gene PDZ and LIM domain 4

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

Related articles in PubMed

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (1) 

Pathways from BioSystems

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
ATP binding IEA
Inferred from Electronic Annotation
more info
 
carnitine transmembrane transporter activity IDA
Inferred from Direct Assay
more info
PubMed 
nucleotide binding IEA
Inferred from Electronic Annotation
more info
 
transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 
transporter activity IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
carnitine transport IDA
Inferred from Direct Assay
more info
PubMed 
ion transport IEA
Inferred from Electronic Annotation
more info
 
transmembrane transport IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
intrinsic component of peroxisomal membrane IDA
Inferred from Direct Assay
more info
PubMed 
membrane IEA
Inferred from Electronic Annotation
more info
 
peroxisome IDA
Inferred from Direct Assay
more info
PubMed 

General protein information

Preferred Names
solute carrier family 22 member 21
Names
organic cation/carnitine transporter 3
solute carrier family 22 (organic cation transporter), member 9

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001362202.1NP_001349131.1  solute carrier family 22 member 21 isoform 2

    Status: VALIDATED

    Source sequence(s)
    AK080177, AL596444
    Conserved Domains (1) summary
    cl26863
    Location:1347
    Sugar_tr; Sugar (and other) transporter
  2. NM_019723.3NP_062697.1  solute carrier family 22 member 21 isoform 1

    See identical proteins and their annotated locations for NP_062697.1

    Status: VALIDATED

    Source sequence(s)
    AL596444
    Consensus CDS
    CCDS24688.1
    UniProtKB/Swiss-Prot
    Q9WTN6
    UniProtKB/TrEMBL
    A2RSK7
    Related
    ENSMUSP00000075814.4, OTTMUSP00000005827, ENSMUST00000076493.10
    Conserved Domains (2) summary
    cd06174
    Location:123513
    MFS; The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of ...
    TIGR00898
    Location:12523
    2A0119; cation transport protein

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p4 C57BL/6J

Genomic

  1. NC_000077.6 Reference GRCm38.p4 C57BL/6J

    Range
    53949961..53980820 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006533805.3XP_006533868.1  solute carrier family 22 member 21 isoform X2

    Conserved Domains (2) summary
    cd06174
    Location:251421
    MFS; The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of ...
    TIGR00898
    Location:12431
    2A0119; cation transport protein
  2. XM_006533804.3XP_006533867.1  solute carrier family 22 member 21 isoform X1

    See identical proteins and their annotated locations for XP_006533867.1

    Conserved Domains (2) summary
    cd06174
    Location:123484
    MFS; The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of ...
    TIGR00898
    Location:12487
    2A0119; cation transport protein
  3. XM_006533807.3XP_006533870.1  solute carrier family 22 member 21 isoform X3

    Conserved Domains (1) summary
    cl26863
    Location:1347
    Sugar_tr; Sugar (and other) transporter
  4. XM_011249156.2XP_011247458.1  solute carrier family 22 member 21 isoform X4

    See identical proteins and their annotated locations for XP_011247458.1

    Conserved Domains (1) summary
    cd06174
    Location:131301
    MFS; The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of ...
  5. XM_011249155.2XP_011247457.1  solute carrier family 22 member 21 isoform X4

    See identical proteins and their annotated locations for XP_011247457.1

    Conserved Domains (1) summary
    cd06174
    Location:131301
    MFS; The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of ...
  6. XM_006533808.3XP_006533871.1  solute carrier family 22 member 21 isoform X4

    See identical proteins and their annotated locations for XP_006533871.1

    Conserved Domains (1) summary
    cd06174
    Location:131301
    MFS; The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of ...
  7. XM_006533809.3XP_006533872.1  solute carrier family 22 member 21 isoform X5

    Conserved Domains (1) summary
    cd06174
    Location:123293
    MFS; The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of ...
  8. XM_006533810.3XP_006533873.1  solute carrier family 22 member 21 isoform X6

    Conserved Domains (1) summary
    cd06174
    Location:123278
    MFS; The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of ...
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